Identification and prioritization of environmental organic pollutants: from an analytical and toxicological perspective

T Ruan, P Li, H Wang, T Li, G Jiang - Chemical Reviews, 2023 - ACS Publications
Exposure to environmental organic pollutants has triggered significant ecological impacts
and adverse health outcomes, which have been received substantial and increasing …

Software tools and approaches for compound identification of LC-MS/MS data in metabolomics

I Blaženović, T Kind, J Ji, O Fiehn - Metabolites, 2018 - mdpi.com
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …

CFM-ID 4.0: more accurate ESI-MS/MS spectral prediction and compound identification

F Wang, J Liigand, S Tian, D Arndt, R Greiner… - Analytical …, 2021 - ACS Publications
In the field of metabolomics, mass spectrometry (MS) is the method most commonly used for
identifying and annotating metabolites. As this typically involves matching a given MS …

Searching molecular structure databases with tandem mass spectra using CSI: FingerID

K Dührkop, H Shen, M Meusel… - Proceedings of the …, 2015 - National Acad Sciences
Metabolites provide a direct functional signature of cellular state. Untargeted metabolomics
experiments usually rely on tandem MS to identify the thousands of compounds in a …

Topic modeling for untargeted substructure exploration in metabolomics

JJJ van Der Hooft, J Wandy… - Proceedings of the …, 2016 - National Acad Sciences
The potential of untargeted metabolomics to answer important questions across the life
sciences is hindered because of a paucity of computational tools that enable extraction of …

Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification

F Allen, R Greiner, D Wishart - Metabolomics, 2015 - Springer
Electrospray tandem mass spectrometry (ESI-MS/MS) is commonly used in high throughput
metabolomics. One of the key obstacles to the effective use of this technology is the difficulty …

Chemometric methods in data processing of mass spectrometry-based metabolomics: A review

L Yi, N Dong, Y Yun, B Deng, D Ren, S Liu… - Analytica chimica acta, 2016 - Elsevier
This review focuses on recent and potential advances in chemometric methods in relation to
data processing in metabolomics, especially for data generated from mass spectrometric …

Dereplication: racing to speed up the natural products discovery process

SP Gaudêncio, F Pereira - Natural product reports, 2015 - pubs.rsc.org
Covering: 1993–2014 (July) To alleviate the dereplication holdup, which is a major
bottleneck in natural products discovery, scientists have been conducting their research …

Fragmentation trees reloaded

S Böcker, K Dührkop - Journal of cheminformatics, 2016 - Springer
Background Untargeted metabolomics commonly uses liquid chromatography mass
spectrometry to measure abundances of metabolites; subsequent tandem mass …

A tutorial in small molecule identification via electrospray ionization‐mass spectrometry: The practical art of structural elucidation

T De Vijlder, D Valkenborg, F Lemière… - Mass spectrometry …, 2018 - Wiley Online Library
The identification of unknown molecules has been one of the cornerstone applications of
mass spectrometry for decades. This tutorial reviews the basics of the interpretation of …