Enzymes' power for plastics degradation
V Tournier, S Duquesne, F Guillamot… - Chemical …, 2023 - ACS Publications
Plastics are everywhere in our modern way of living, and their production keeps increasing
every year, causing major environmental concerns. Nowadays, the end-of-life management …
every year, causing major environmental concerns. Nowadays, the end-of-life management …
Engineering the third wave of biocatalysis
UT Bornscheuer, GW Huisman, RJ Kazlauskas, S Lutz… - Nature, 2012 - nature.com
Over the past ten years, scientific and technological advances have established biocatalysis
as a practical and environmentally friendly alternative to traditional metallo-and …
as a practical and environmentally friendly alternative to traditional metallo-and …
Fast and flexible protein design using deep graph neural networks
Protein structure and function is determined by the arrangement of the linear sequence of
amino acids in 3D space. We show that a deep graph neural network, ProteinSolver, can …
amino acids in 3D space. We show that a deep graph neural network, ProteinSolver, can …
Pi-Pi contacts are an overlooked protein feature relevant to phase separation
Protein phase separation is implicated in formation of membraneless organelles, signaling
puncta and the nuclear pore. Multivalent interactions of modular binding domains and their …
puncta and the nuclear pore. Multivalent interactions of modular binding domains and their …
PremPS: Predicting the impact of missense mutations on protein stability
Y Chen, H Lu, N Zhang, Z Zhu, S Wang… - PLoS computational …, 2020 - journals.plos.org
Computational methods that predict protein stability changes induced by missense
mutations have made a lot of progress over the past decades. Most of the available methods …
mutations have made a lot of progress over the past decades. Most of the available methods …
ProThermDB: thermodynamic database for proteins and mutants revisited after 15 years
ProThermDB is an updated version of the thermodynamic database for proteins and mutants
(ProTherm), which has∼ 31 500 data on protein stability, an increase of 84% from the …
(ProTherm), which has∼ 31 500 data on protein stability, an increase of 84% from the …
Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability
INTRODUCTION Temperature is crucially important to life. Small temperature changes can
differentiate optimal and lethal growth conditions of living organisms. Because of the higher …
differentiate optimal and lethal growth conditions of living organisms. Because of the higher …
TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions
Although deep learning approaches have had tremendous success in image, video and
audio processing, computer vision, and speech recognition, their applications to three …
audio processing, computer vision, and speech recognition, their applications to three …
MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect
Multiplex assays of variant effect (MAVEs), such as deep mutational scans and massively
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …
[HTML][HTML] FoldX as protein engineering tool: better than random based approaches?
O Buß, J Rudat, K Ochsenreither - Computational and structural …, 2018 - Elsevier
Improving protein stability is an important goal for basic research as well as for clinical and
industrial applications but no commonly accepted and widely used strategy for efficient …
industrial applications but no commonly accepted and widely used strategy for efficient …