The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

BB Oude Munnink, N Worp, DF Nieuwenhuijse… - Nature medicine, 2021 - nature.com
The current coronavirus disease 2019 (COVID-19) pandemic is the first to apply whole-
genome sequencing near to real time, with over 2 million severe acute respiratory syndrome …

Increased interregional virus exchange and nucleotide diversity outline the expansion of chikungunya virus in Brazil

J Xavier, LCJ Alcantara, V Fonseca, M Lima… - Nature …, 2023 - nature.com
The emergence and reemergence of mosquito-borne diseases in Brazil such as yellow
fever, zika, chikungunya, and dengue have had serious impacts on public health. Concerns …

A new lineage nomenclature to aid genomic surveillance of dengue virus

V Hill, S Cleemput, JS Pereira, RJ Gifford… - PLoS …, 2024 - journals.plos.org
Dengue virus (DENV) is currently causing epidemics of unprecedented scope in endemic
settings and expanding to new geographical areas. It is therefore critical to track this virus …

Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil

M Giovanetti, F Pinotti, C Zanluca, V Fonseca… - Science …, 2023 - science.org
Despite the considerable morbidity and mortality of yellow fever virus (YFV) infections in
Brazil, our understanding of disease outbreaks is hampered by limited viral genomic data …

SARS-CoV-2 genomic surveillance in Brazil: a systematic review with scientometric analysis

D Menezes, PLC Fonseca, JLF de Araújo, RP Souza - Viruses, 2022 - mdpi.com
Several studies have monitored the SARS-CoV-2 variants in Brazil throughout the
pandemic. Here, we systematically reviewed and conducted a scientometric analysis of the …

Global transmission suitability maps for dengue virus transmitted by Aedes aegypti from 1981 to 2019

T Nakase, M Giovanetti, U Obolski, J Lourenço - Scientific Data, 2023 - nature.com
Mosquito-borne viruses increasingly threaten human populations due to accelerating
changes in climate, human and mosquito migration, and land use practices. Over the last …

[HTML][HTML] Emergence of dengue virus serotype 2 cosmopolitan genotype, Brazil

M Giovanetti, LA Pereira, GA Santiago… - Emerging infectious …, 2022 - ncbi.nlm.nih.gov
We used nanopore sequencing and phylogenetic analyses to identify a cosmopolitan
genotype of dengue virus serotype 2 that was isolated from a 56-year-old male patient from …

DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus

CBF Vogels, V Hill, MI Breban, C Chaguza, LM Paul… - BMC genomics, 2024 - Springer
Background The increasing burden of dengue virus on public health due to more explosive
and frequent outbreaks highlights the need for improved surveillance and control. Genomic …

Phylogenetic Reconstructions Reveal the Circulation of a Novel Dengue Virus-1V Clade and the Persistence of a Dengue Virus-2 III Genotype in Northeast Brazil

H Fritsch, K Moreno, IAB Lima, CS Santos, BGG Costa… - Viruses, 2023 - mdpi.com
Dengue fever is among the most significant public health concerns in Brazil. To date, the
highest number of Dengue notifications in the Americas has been reported in Brazil, with …

Population at risk of dengue virus transmission has increased due to coupled climate factors and population growth

T Nakase, M Giovanetti, U Obolski… - Communications Earth & …, 2024 - nature.com
Dengue virus transmission has increased over the last four decades seemingly due to
changes in climate, urbanization and population growth. Using estimates of dengue …