Phylogenies and community ecology

CO Webb, DD Ackerly, MA McPeek… - Annual review of …, 2002 - annualreviews.org
▪ Abstract As better phylogenetic hypotheses become available for many groups of
organisms, studies in community ecology can be informed by knowledge of the evolutionary …

Cospeciation vs host‐shift speciation: methods for testing, evidence from natural associations and relation to coevolution

DM De Vienne, G Refrégier… - New …, 2013 - Wiley Online Library
Hosts and their symbionts are involved in intimate physiological and ecological interactions.
The impact of these interactions on the evolution of each partner depends on the time‐scale …

Gene trees in species trees

WP Maddison - Systematic biology, 1997 - academic.oup.com
Exploration of the relationship between gene trees and their containing species trees leads
to consideration of how to reconstruct species trees from gene trees and of the concept of …

[图书][B] Historical biogeography of Neotropical freshwater fishes

JS Albert, R Reis - 2011 - books.google.com
The fish faunas of continental South and Central America constitute one of the greatest
concentrations of aquatic diversity on Earth, consisting of about 10 percent of all living …

[PDF][PDF] macclade

WP Maddison, DR Maddison - Sinauer, Sunderland, MA, 1992 - sbs.utexas.edu
This book is both a manual for the computer program MacClade, describing its features and
potential uses, as well as a portrayal of a phylogenetic approach to studying diversity and …

[图书][B] Phylogenetics: theory and practice of phylogenetic systematics

EO Wiley, BS Lieberman - 2011 - books.google.com
The long-awaited revision of the industry standard on phylogenetics Since the publication of
the first edition of this landmark volume more than twenty-five years ago, phylogenetic …

Geometry of the space of phylogenetic trees

LJ Billera, SP Holmes, K Vogtmann - Advances in Applied Mathematics, 2001 - Elsevier
We consider a continuous space which models the set of all phylogenetic trees having a
fixed set of leaves. This space has a natural metric of nonpositive curvature, giving a way of …

A likelihood framework for inferring the evolution of geographic range on phylogenetic trees

RH Ree, BR Moore, CO Webb, MJ Donoghue - Evolution, 2005 - Wiley Online Library
At a time when historical biogeography appears to be again expanding its scope after a
period of focusing primarily on discerning area relationships using cladograms, new …

Gene trees and species trees: molecular systematics as one-character taxonomy

JJ Doyle - Systematic Botany, 1992 - JSTOR
Reconstruction of phylogenies from molecular data has become an important and
increasingly common approach in systematics. The product of such studies is a gene tree …

Phylogeny estimation and hypothesis testing using maximum likelihood

JP Huelsenbeck, KA Crandall - Annual Review of Ecology and …, 1997 - annualreviews.org
One of the strengths of the maximum likelihood method of phylogenetic estimation is the
ease with which hypotheses can be formulated and tested. Maximum likelihood analysis of …