[HTML][HTML] limma powers differential expression analyses for RNA-sequencing and microarray studies

ME Ritchie, B Phipson, DI Wu, Y Hu… - Nucleic acids …, 2015 - academic.oup.com
Abstract limma is an R/Bioconductor software package that provides an integrated solution
for analysing data from gene expression experiments. It contains rich features for handling …

50 years of data science

D Donoho - Journal of Computational and Graphical Statistics, 2017 - Taylor & Francis
More than 50 years ago, John Tukey called for a reformation of academic statistics. In “The
Future of Data Analysis,” he pointed to the existence of an as-yet unrecognized science …

[图书][B] Feature engineering and selection: A practical approach for predictive models

M Kuhn, K Johnson - 2019 - taylorfrancis.com
The process of developing predictive models includes many stages. Most resources focus
on the modeling algorithms but neglect other critical aspects of the modeling process. This …

Best practices for estimating, interpreting, and presenting nonlinear interaction effects

TD Mize - Sociological Science, 2019 - sociologicalscience.com
Many effects of interest to sociologists are nonlinear. Additionally, many effects of interest
are interaction effects—that is, the effect of one independent variable is contingent on the …

Visualizing fit and lack of fit in complex regression models with predictor effect plots and partial residuals

J Fox, S Weisberg - Journal of Statistical Software, 2018 - jstatsoft.org
Predictor effect displays, introduced in this article, visualize the response surface of complex
regression models by averaging and conditioning, producing a sequence of 2D line graphs …

Visualizing the effects of predictor variables in black box supervised learning models

DW Apley, J Zhu - Journal of the Royal Statistical Society Series …, 2020 - academic.oup.com
In many supervised learning applications, understanding and visualizing the effects of the
predictor variables on the predicted response is of paramount importance. A shortcoming of …

Harmonization of multi-site diffusion tensor imaging data

JP Fortin, D Parker, B Tunç, T Watanabe, MA Elliott… - Neuroimage, 2017 - Elsevier
Diffusion tensor imaging (DTI) is a well-established magnetic resonance imaging (MRI)
technique used for studying microstructural changes in the white matter. As with many other …

[图书][B] Fundamentals of data visualization: a primer on making informative and compelling figures

CO Wilke - 2019 - books.google.com
Effective visualization is the best way to communicate information from the increasingly large
and complex datasets in the natural and social sciences. But with the increasing power of …

[图书][B] R in action: data analysis and graphics with R and Tidyverse

R Kabacoff - 2022 - books.google.com
R is the most powerful tool you can use for statistical analysis. This definitive guide smooths
R's steep learning curve with practical solutions and real-world applications for commercial …

[图书][B] Visualization analysis and design

T Munzner - 2014 - books.google.com
Learn How to Design Effective Visualization SystemsVisualization Analysis and Design
provides a systematic, comprehensive framework for thinking about visualization in terms of …