Genome-resolved metagenomics: a game changer for microbiome medicine
N Kim, J Ma, W Kim, J Kim, P Belenky… - Experimental & Molecular …, 2024 - nature.com
Recent substantial evidence implicating commensal bacteria in human diseases has given
rise to a new domain in biomedical research: microbiome medicine. This emerging field …
rise to a new domain in biomedical research: microbiome medicine. This emerging field …
[HTML][HTML] Tau PTM profiles identify patient heterogeneity and stages of Alzheimer's disease
To elucidate the role of Tau isoforms and post-translational modification (PTM) stoichiometry
in Alzheimer's disease (AD), we generated a high-resolution quantitative proteomics map of …
in Alzheimer's disease (AD), we generated a high-resolution quantitative proteomics map of …
Evolution of buffering in a genetic circuit controlling plant stem cell proliferation
D Rodriguez-Leal, C Xu, CT Kwon, C Soyars… - Nature …, 2019 - nature.com
Precise control of plant stem cell proliferation is necessary for the continuous and
reproducible development of plant organs,. The peptide ligand CLAVATA3 (CLV3) and its …
reproducible development of plant organs,. The peptide ligand CLAVATA3 (CLV3) and its …
MCUB regulates the molecular composition of the mitochondrial calcium uniporter channel to limit mitochondrial calcium overload during stress
Background: The mitochondrial calcium uniporter (mtCU) is an≈ 700-kD multisubunit
channel residing in the inner mitochondrial membrane required for mitochondrial Ca2+ …
channel residing in the inner mitochondrial membrane required for mitochondrial Ca2+ …
Copy number variation in fungi and its implications for wine yeast genetic diversity and adaptation
JL Steenwyk, A Rokas - Frontiers in microbiology, 2018 - frontiersin.org
In recent years, copy number (CN) variation has emerged as a new and significant source of
genetic polymorphisms contributing to the phenotypic diversity of populations. CN variants …
genetic polymorphisms contributing to the phenotypic diversity of populations. CN variants …
Hypoxia Inducible Factor (HIF) transcription factor family expansion, diversification, divergence and selection in eukaryotes
AM Graham, JS Presnell - PloS one, 2017 - journals.plos.org
Hypoxia inducible factor (HIF) transcription factors are crucial for regulating a variety of
cellular activities in response to oxygen stress (hypoxia). In this study, we determine the …
cellular activities in response to oxygen stress (hypoxia). In this study, we determine the …
The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction
Motivation The computational prediction of gene function is a key step in making full use of
newly sequenced genomes. Function is generally predicted by transferring annotations from …
newly sequenced genomes. Function is generally predicted by transferring annotations from …
Pairwise comparisons across species are problematic when analyzing functional genomic data
There is considerable interest in comparing functional genomic data across species. One
goal of such work is to provide an integrated understanding of genome and phenotype …
goal of such work is to provide an integrated understanding of genome and phenotype …
Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway
BT Piatkowski, K Imwattana, EA Tripp… - Molecular Phylogenetics …, 2020 - Elsevier
The flavonoids, one of the largest classes of plant secondary metabolites, are found in
lineages that span the land plant phylogeny and play important roles in stress responses …
lineages that span the land plant phylogeny and play important roles in stress responses …
Not Only for Egg Yolk—Functional and Evolutionary Insights from Expression, Selection, and Structural Analyses of Formica Ant Vitellogenins
C Morandin, H Havukainen, J Kulmuni… - Molecular biology …, 2014 - academic.oup.com
Vitellogenin (Vg), a storage protein, has been extensively studied for its egg-yolk precursor
role, and it has been suggested to be fundamentally involved in caste differences in social …
role, and it has been suggested to be fundamentally involved in caste differences in social …