Post-polyploid diploidization and diversification through dysploid changes

T Mandáková, MA Lysak - Current opinion in plant biology, 2018 - Elsevier
Highlights•Post-polyploid diploidization (PPD) in angiosperms usually operates by
descending dysploidy.•PPD is acting with differing intensities and rates.•Multiple base …

Evolution of complex genome architecture in gymnosperms

T Wan, Y Gong, Z Liu, YD Zhou, C Dai, Q Wang - GigaScience, 2022 - academic.oup.com
Gymnosperms represent an ancient lineage that diverged from early spermatophytes during
the Devonian. The long fossil records and low diversity in living species prove their complex …

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

TJ Shalev, OG El-Dien, MMS Yuen… - Genome …, 2022 - genome.cshlp.org
We assembled the 9.8-Gbp genome of western redcedar (WRC; Thuja plicata), an
ecologically and economically important conifer species of the Cupressaceae. The genome …

[HTML][HTML] Performance of genomic prediction within and across generations in maritime pine

J Bartholomé, J Van Heerwaarden, F Isik, C Boury… - BMC genomics, 2016 - Springer
Background Genomic selection (GS) is a promising approach for decreasing breeding cycle
length in forest trees. Assessment of progeny performance and of the prediction accuracy of …

Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention

T Mandakova, Z Li, MS Barker, MA Lysak - The Plant Journal, 2017 - Wiley Online Library
Hybridization and polyploidy followed by genome‐wide diploidization had a significant
impact on the diversification of land plants. The ancient At‐α whole‐genome duplication …

The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants

AR Sullivan, Y Eldfjell, B Schiffthaler… - Genome biology and …, 2020 - academic.oup.com
Plant mitogenomes can be difficult to assemble because they are structurally dynamic and
prone to intergenomic DNA transfers, leading to the unusual situation where an organelle …

High-density linkage mapping and distribution of segregation distortion regions in the oak genome

C Bodénès, E Chancerel, F Ehrenmann… - DNA …, 2016 - academic.oup.com
We developed the densest single-nucleotide polymorphism (SNP)-based linkage genetic
map to date for the genus Quercus. An 8k gene-based SNP array was used to genotype …

A high‐resolution reference genetic map positioning 8.8 K genes for the conifer white spruce: Structural genomics implications and correspondence with physical …

N Pavy, M Lamothe, B Pelgas, F Gagnon… - The Plant …, 2017 - Wiley Online Library
Over the last decade, extensive genetic and genomic resources have been developed for
the conifer white spruce (Picea glauca, Pinaceae), which has one of the largest plant …

High-density genetic linkage mapping in Sitka spruce advances the integration of genomic resources in conifers

H Tumas, JJ Ilska, S Gérardi, J Laroche… - G3: Genes …, 2024 - academic.oup.com
In species with large and complex genomes such as conifers, dense linkage maps are a
useful resource for supporting genome assembly and laying the genomic groundwork at the …

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)

C Bernhardsson, A Vidalis, X Wang… - G3: Genes …, 2019 - academic.oup.com
Norway spruce (Picea abies (L.) Karst.) is a conifer species of substanital economic and
ecological importance. In common with most conifers, the P. abies genome is very large (∼ …