Comparing proteins by their internal dynamics: Exploring structure–function relationships beyond static structural alignments
C Micheletti - Physics of life reviews, 2013 - Elsevier
The growing interest for comparing protein internal dynamics owes much to the realisation
that protein function can be accompanied or assisted by structural fluctuations and …
that protein function can be accompanied or assisted by structural fluctuations and …
Models of anomalous diffusion in crowded environments
IM Sokolov - Soft Matter, 2012 - pubs.rsc.org
A particle's motion in crowded environments often exhibits anomalous diffusion, whose
nature depends on the situation at hand and is formalized within different physical models …
nature depends on the situation at hand and is formalized within different physical models …
Identification of slow molecular order parameters for Markov model construction
G Pérez-Hernández, F Paul, T Giorgino… - The Journal of …, 2013 - pubs.aip.org
A goal in the kinetic characterization of a macromolecular system is the description of its
slow relaxation processes via (i) identification of the structural changes involved in these …
slow relaxation processes via (i) identification of the structural changes involved in these …
Markov models of molecular kinetics: Generation and validation
Markov state models of molecular kinetics (MSMs), in which the long-time statistical
dynamics of a molecule is approximated by a Markov chain on a discrete partition of …
dynamics of a molecule is approximated by a Markov chain on a discrete partition of …
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
Enzymes are biological catalysts vital to life processes and have attracted century-long
investigation. The classic Michaelis-Menten mechanism provides a highly satisfactory …
investigation. The classic Michaelis-Menten mechanism provides a highly satisfactory …
Binding of small-molecule ligands to proteins:“what you see” is not always “what you get”
We review insights from computational studies of affinities of ligands binding to proteins. The
power of structural biology is in translating knowledge of protein structures into insights …
power of structural biology is in translating knowledge of protein structures into insights …
[图书][B] Fractional calculus view of complexity: tomorrow's science
BJ West - 2016 - books.google.com
This book explains the quantitative reasoning required by the fractional calculus applied to
complex physical, social, and biological phenomena. Fractional calculus is inextricably …
complex physical, social, and biological phenomena. Fractional calculus is inextricably …
Single particle tracking in systems showing anomalous diffusion: the role of weak ergodicity breaking
Anomalous diffusion has been widely observed by single particle tracking microscopy in
complex systems such as biological cells. The resulting time series are usually evaluated in …
complex systems such as biological cells. The resulting time series are usually evaluated in …
Fractional langevin equation
E Lutz - Physical Review E, 2001 - APS
We investigate fractional Brownian motion with a microscopic random-matrix model and
introduce a fractional Langevin equation. We use the latter to study both subdiffusion and …
introduce a fractional Langevin equation. We use the latter to study both subdiffusion and …
Fractional Brownian Motion Versus the Continuous-Time Random Walk:<? format?> A Simple Test for Subdiffusive Dynamics
Fractional Brownian motion with Hurst index less then 1/2 and continuous-time random walk
with heavy tailed waiting times (and the corresponding fractional Fokker-Planck equation) …
with heavy tailed waiting times (and the corresponding fractional Fokker-Planck equation) …