[HTML][HTML] The use of single-cell RNA-Seq to understand virus–host interactions
S Cristinelli, A Ciuffi - Current opinion in virology, 2018 - Elsevier
Highlights•Single cell analyses reveal cell heterogeneity, often masked at population
level.•ScRNA-Seq identifies transcriptomic signatures hallmarking distinct cell …
level.•ScRNA-Seq identifies transcriptomic signatures hallmarking distinct cell …
Atypical acute myeloid leukemia-specific transcripts generate shared and immunogenic MHC class-I-associated epitopes
G Ehx, JD Larouche, C Durette, JP Laverdure… - Immunity, 2021 - cell.com
Acute myeloid leukemia (AML) has not benefited from innovative immunotherapies, mainly
because of the lack of actionable immune targets. Using an original proteogenomic …
because of the lack of actionable immune targets. Using an original proteogenomic …
Kmtricks: efficient and flexible construction of bloom filters for large sequencing data collections
When indexing large collections of short-read sequencing data, a common operation that
has now been implemented in several tools (Sequence Bloom Trees and variants, BIGSI) is …
has now been implemented in several tools (Sequence Bloom Trees and variants, BIGSI) is …
Bridging the gap between reference and real transcriptomes
A Morillon, D Gautheret - Genome biology, 2019 - Springer
Genetic, transcriptional, and post-transcriptional variations shape the transcriptome of
individual cells, rendering establishing an exhaustive set of reference RNAs a complicated …
individual cells, rendering establishing an exhaustive set of reference RNAs a complicated …
Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata)
Abstract Theory predicts that the sexes can achieve greater fitness if loci with sexually
antagonistic polymorphisms become linked to the sex determining loci, and this can favor …
antagonistic polymorphisms become linked to the sex determining loci, and this can favor …
MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data
Calling fusion genes from RNA-seq data is well established, but other transcriptional
variants are difficult to detect using existing approaches. To identify all types of variants in …
variants are difficult to detect using existing approaches. To identify all types of variants in …
[HTML][HTML] LINC00922 accelerates the proliferation, migration and invasion of lung cancer via the miRNA-204/CXCR4 axis
T Liang, B Wang, J Li, Y Liu - Medical science monitor …, 2019 - ncbi.nlm.nih.gov
LINC00922 Accelerates the Proliferation, Migration and Invasion of Lung Cancer Via the
miRNA-204/CXCR4 Axis - PMC Back to Top Skip to main content NIH NLM Logo Access keys …
miRNA-204/CXCR4 Axis - PMC Back to Top Skip to main content NIH NLM Logo Access keys …
Genetic variations associated with long noncoding RNAs
J Luo, R Chen - Essays in Biochemistry, 2020 - portlandpress.com
Genetic variations, including single nucleotide polymorphisms (SNPs) and structural
variations, are widely distributed in the genome, including the long noncoding RNA …
variations, are widely distributed in the genome, including the long noncoding RNA …
iMOKA: k-mer based software to analyze large collections of sequencing data
C Lorenzi, S Barriere, JP Villemin, L Dejardin Bretones… - Genome biology, 2020 - Springer
Abstract iMOKA (interactive multi-objective k-mer analysis) is a software that enables
comprehensive analysis of sequencing data from large cohorts to generate robust …
comprehensive analysis of sequencing data from large cohorts to generate robust …
Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis
M Pinskaya, Z Saci, M Gallopin, M Gabriel… - Life science …, 2019 - life-science-alliance.org
The use of RNA-sequencing technologies held a promise of improved diagnostic tools
based on comprehensive transcript sets. However, mining human transcriptome data for …
based on comprehensive transcript sets. However, mining human transcriptome data for …