Towards reproducible computational drug discovery
The reproducibility of experiments has been a long standing impediment for further scientific
progress. Computational methods have been instrumental in drug discovery efforts owing to …
progress. Computational methods have been instrumental in drug discovery efforts owing to …
SQSTM1/p62: a potential target for neurodegenerative disease
Neurodegenerative diseases, characterized by a progressive loss of brain function, affect
the lives of millions of individuals worldwide. The complexity of the brain poses a challenge …
the lives of millions of individuals worldwide. The complexity of the brain poses a challenge …
BioModels—15 years of sharing computational models in life science
RS Malik-Sheriff, M Glont, TVN Nguyen… - Nucleic acids …, 2020 - academic.oup.com
Computational modelling has become increasingly common in life science research. To
provide a platform to support universal sharing, easy accessibility and model reproducibility …
provide a platform to support universal sharing, easy accessibility and model reproducibility …
Computational models for clinical applications in personalized medicine—guidelines and recommendations for data integration and model validation
CB Collin, T Gebhardt, M Golebiewski… - Journal of personalized …, 2022 - mdpi.com
The future development of personalized medicine depends on a vast exchange of data from
different sources, as well as harmonized integrative analysis of large-scale clinical health …
different sources, as well as harmonized integrative analysis of large-scale clinical health …
The European Bioinformatics Institute in 2016: data growth and integration
New technologies are revolutionising biological research and its applications by making it
easier and cheaper to generate ever-greater volumes and types of data. In response, the …
easier and cheaper to generate ever-greater volumes and types of data. In response, the …
[HTML][HTML] The promises of quantitative systems pharmacology modelling for drug development
VR Knight-Schrijver, V Chelliah… - Computational and …, 2016 - Elsevier
Recent growth in annual new therapeutic entity (NTE) approvals by the US Food and Drug
Administration (FDA) suggests a positive trend in current research and development (R&D) …
Administration (FDA) suggests a positive trend in current research and development (R&D) …
Best practices to maximize the use and reuse of quantitative and systems pharmacology models: recommendations from the United Kingdom quantitative and systems …
L Cucurull‐Sanchez, MJ Chappell… - CPT …, 2019 - Wiley Online Library
The lack of standardization in the way that quantitative and systems pharmacology (QSP)
models are developed, tested, and documented hinders their reproducibility, reusability, and …
models are developed, tested, and documented hinders their reproducibility, reusability, and …
Harnessing big data for systems pharmacology
Systems pharmacology aims to holistically understand mechanisms of drug actions to
support drug discovery and clinical practice. Systems pharmacology modeling (SPM) is data …
support drug discovery and clinical practice. Systems pharmacology modeling (SPM) is data …
How modeling standards, software, and initiatives support reproducibility in systems biology and systems medicine
D Waltemath, O Wolkenhauer - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
Objective: Only reproducible results are of significance to science. The lack of suitable
standards and appropriate support of standards in software tools has led to numerous …
standards and appropriate support of standards in software tools has led to numerous …
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable
D Nickerson, K Atalag, B De Bono… - Interface …, 2016 - royalsocietypublishing.org
Reconstructing and understanding the Human Physiome virtually is a complex mathematical
problem, and a highly demanding computational challenge. Mathematical models spanning …
problem, and a highly demanding computational challenge. Mathematical models spanning …