Variation in protein gene and intron content among land plant mitogenomes

JP Mower - Mitochondrion, 2020 - Elsevier
The functional content of the mitochondrial genome (mitogenome) is highly diverse across
eukaryotes. Among land plants, our understanding of the variation in mitochondrial gene …

Deciphering the Multi-Chromosomal Mitochondrial Genome of Populus simonii

C Bi, Y Qu, J Hou, K Wu, N Ye, T Yin - Frontiers in Plant Science, 2022 - frontiersin.org
Mitochondria, inherited maternally, are energy metabolism organelles that generate most of
the chemical energy needed to power cellular various biochemical reactions. Deciphering …

Dicyemida and Orthonectida: two stories of body plan simplification

OA Zverkov, KV Mikhailov, SV Isaev, LY Rusin… - Frontiers in …, 2019 - frontiersin.org
Two enigmatic groups of morphologically simple parasites of invertebrates, the Dicyemida
(syn. Rhombozoa) and the Orthonectida, since the 19th century have been usually …

Gene fragmentation and RNA editing without borders: eccentric mitochondrial genomes of diplonemids

B Kaur, K Záhonová, M Valach… - Nucleic Acids …, 2020 - academic.oup.com
Diplonemids are highly abundant heterotrophic marine protists. Previous studies showed
that their strikingly bloated mitochondrial genome is unique because of systematic gene …

Distinguishing Sanghuangporus from sanghuang-related fungi: a comparative and phylogenetic analysis based on mitogenomes

X Feng, T Xie, Z Wang, C Lin, Z Li, J Huo, Y Li… - Applied Microbiology …, 2024 - Springer
Abstract The Chinese medicinal fungi “Sanghuang” have been long recognized for their
significant and valued medicinal properties, as documented in ancient medical literature …

The First Five Mitochondrial Genomes for the Family Nidulariaceae Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of Agaricales

Z Li, T Xie, X Feng, Z Wang, C Lin, G Li, XZ Li… - International Journal of …, 2023 - mdpi.com
The family Nidulariaceae, consisting of five genera including Cyathus, is a unique group of
mushrooms commonly referred to as bird's nest fungi due to their striking resemblance to …

Unscrambling genetic information at the RNA level

S Moreira, S Breton, G Burger - Wiley Interdisciplinary Reviews …, 2012 - Wiley Online Library
Genomics aims at unraveling the blueprint of life; however, DNA sequence alone does not
always reveal the proteins and structural RNAs encoded by the genome. The reason is that …

Do pseudogenes pose a problem for metabarcoding marine animal communities?

JA Schultz, PDN Hebert - Molecular Ecology Resources, 2022 - Wiley Online Library
Because DNA metabarcoding typically employs sequence diversity among mitochondrial
amplicons to estimate species composition, nuclear mitochondrial pseudogenes (NUMTs) …

Ophirina amphinema n. gen., n. sp., a New Deeply Branching Discobid with Phylogenetic Affinity to Jakobids

A Yabuki, Y Gyaltshen, AA Heiss, K Fujikura, E Kim - Scientific reports, 2018 - nature.com
We report a novel nanoflagellate, Ophirina amphinema n. gen. n. sp., isolated from a lagoon
of the Solomon Islands. The flagellate displays 'typical excavate'morphological …

A comparative analysis of mitochondrial genomes in eustigmatophyte algae

T Ševčíková, V Klimeš, V Zbránková… - Genome biology and …, 2016 - academic.oup.com
Abstract Eustigmatophyceae (Ochrophyta, Stramenopiles) is a small algal group with
species of the genus Nannochloropsis being its best studied representatives. Nuclear and …