Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2017 - pmc.ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications

L Malinovska, V Cappelletti, D Kohler, I Piazza… - Nature protocols, 2023 - nature.com
Proteins regulate biological processes by changing their structure or abundance to
accomplish a specific function. In response to a perturbation, protein structure may be …

Critical assessment of methods of protein structure prediction (CASP)—round x

J Moult, K Fidelis, A Kryshtafovych… - Proteins: Structure …, 2014 - Wiley Online Library
This article is an introduction to the special issue of the journal PROTEINS, dedicated to the
tenth Critical Assessment of Structure Prediction (CASP) experiment to assess the state of …

Mass spectrometry of nucleic acid noncovalent complexes

E Largy, A Konig, A Ghosh, D Ghosh… - Chemical …, 2021 - ACS Publications
Nucleic acids have been among the first targets for antitumor drugs and antibiotics. With the
unveiling of new biological roles in regulation of gene expression, specific DNA and RNA …

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

J Sangodkar, A Perl, R Tohme, J Kiselar… - The Journal of …, 2017 - Am Soc Clin Investig
Targeted cancer therapies, which act on specific cancer-associated molecular targets, are
predominantly inhibitors of oncogenic kinases. While these drugs have achieved some …

Native ion mobility-mass spectrometry and related methods in structural biology

A Konijnenberg, A Butterer, F Sobott - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
Mass spectrometry-based methods have become increasingly important in structural biology—
in particular for large and dynamic, even heterogeneous assemblies of biomolecules. Native …

[图书][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

Mass spectrometry: come of age for structural and dynamical biology

JLP Benesch, BT Ruotolo - Current opinion in structural biology, 2011 - Elsevier
Over the past two decades, mass spectrometry (MS) has emerged as a bone fide approach
for structural biology. MS can inform on all levels of protein organization, and enables …

NMR approaches for structural analysis of multidomain proteins and complexes in solution

C Göbl, T Madl, B Simon, M Sattler - Progress in Nuclear Magnetic …, 2014 - Elsevier
NMR spectroscopy is a key method for studying the structure and dynamics of (large)
multidomain proteins and complexes in solution. It plays a unique role in integrated …

Protein complex prediction using Rosetta, AlphaFold, and mass spectrometry covalent labeling

ZC Drake, JT Seffernick, S Lindert - Nature communications, 2022 - nature.com
Covalent labeling (CL) in combination with mass spectrometry can be used as an analytical
tool to study and determine structural properties of protein-protein complexes. However …