Machine learning approaches to drug response prediction: challenges and recent progress
Cancer is a leading cause of death worldwide. Identifying the best treatment using
computational models to personalize drug response prediction holds great promise to …
computational models to personalize drug response prediction holds great promise to …
Machine learning and feature selection for drug response prediction in precision oncology applications
M Ali, T Aittokallio - Biophysical reviews, 2019 - Springer
In-depth modeling of the complex interplay among multiple omics data measured from
cancer cell lines or patient tumors is providing new opportunities toward identification of …
cancer cell lines or patient tumors is providing new opportunities toward identification of …
oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data
D Maeser, RF Gruener, RS Huang - Briefings in bioinformatics, 2021 - academic.oup.com
Cell line drug screening datasets can be utilized for a range of different drug discovery
applications from drug biomarker discovery to building translational models of drug …
applications from drug biomarker discovery to building translational models of drug …
Gene expression based inference of cancer drug sensitivity
S Chawla, A Rockstroh, M Lehman, E Ratther… - Nature …, 2022 - nature.com
Inter and intra-tumoral heterogeneity are major stumbling blocks in the treatment of cancer
and are responsible for imparting differential drug responses in cancer patients. Recently …
and are responsible for imparting differential drug responses in cancer patients. Recently …
Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids
E Prince, J Cruickshank, W Ba-Alawi… - Nature …, 2022 - nature.com
Patient-derived tumor organoids (PDOs) are a highly promising preclinical model that
recapitulates the histology, gene expression, and drug response of the donor patient tumor …
recapitulates the histology, gene expression, and drug response of the donor patient tumor …
Optimization of cell viability assays to improve replicability and reproducibility of cancer drug sensitivity screens
Cancer drug development has been riddled with high attrition rates, in part, due to poor
reproducibility of preclinical models for drug discovery. Poor experimental design and lack of …
reproducibility of preclinical models for drug discovery. Poor experimental design and lack of …
Deep-Resp-Forest: a deep forest model to predict anti-cancer drug response
The identification of therapeutic biomarkers predictive of drug response is crucial in
personalized medicine. A number of computational models to predict response of anti …
personalized medicine. A number of computational models to predict response of anti …
Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy
Outcomes of anticancer therapy vary dramatically among patients due to diverse genetic
and molecular backgrounds, highlighting extensive intertumoral heterogeneity. The …
and molecular backgrounds, highlighting extensive intertumoral heterogeneity. The …
Deep learning methods for drug response prediction in cancer: predominant and emerging trends
Cancer claims millions of lives yearly worldwide. While many therapies have been made
available in recent years, by in large cancer remains unsolved. Exploiting computational …
available in recent years, by in large cancer remains unsolved. Exploiting computational …
[HTML][HTML] Machine learning in the prediction of cancer therapy
Resistance to therapy remains a major cause of cancer treatment failures, resulting in many
cancer-related deaths. Resistance can occur at any time during the treatment, even at the …
cancer-related deaths. Resistance can occur at any time during the treatment, even at the …