Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa
Abstract Background Muscadine grape (Vitis rotundifolia) is resistant to many of the
pathogens that negatively impact the production of common grape (V. vinifera), including the …
pathogens that negatively impact the production of common grape (V. vinifera), including the …
Diverse origins of near-identical antifreeze proteins in unrelated fish lineages provide insights into evolutionary mechanisms of new gene birth and protein sequence …
Determining the origins of novel genes and the mechanisms driving the emergence of new
functions is challenging yet crucial for understanding evolutionary innovations. Recently …
functions is challenging yet crucial for understanding evolutionary innovations. Recently …
Klumpy: A tool to evaluate the integrity of long‐read genome assemblies and illusive sequence motifs
G Madrigal, BF Minhas… - Molecular ecology …, 2025 - Wiley Online Library
The improvement and decreasing costs of third‐generation sequencing technologies has
widened the scope of biological questions researchers can address with de novo genome …
widened the scope of biological questions researchers can address with de novo genome …
Genomics of secondarily temperate adaptation in the only non-Antarctic icefish
AG Rivera-Colón, N Rayamajhi… - Molecular biology …, 2023 - academic.oup.com
White-blooded Antarctic icefishes, a family within the adaptive radiation of Antarctic
notothenioid fishes, are an example of extreme biological specialization to both the chronic …
notothenioid fishes, are an example of extreme biological specialization to both the chronic …
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid …
Mitochondrial genomes are known for their compact size and conserved gene order,
however, recent studies employing long-read sequencing technologies have revealed the …
however, recent studies employing long-read sequencing technologies have revealed the …
Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples
E Buetas, M Jordán-López, A López-Roldán, G D'Auria… - BMC genomics, 2024 - Springer
Background Sequencing variable regions of the 16S rRNA gene (≃ 300 bp) with Illumina
technology is commonly used to study the composition of human microbiota. Unfortunately …
technology is commonly used to study the composition of human microbiota. Unfortunately …
Metabolomics approach to understand molecular mechanisms involved in fungal pathogen–citrus pathosystems
Citrus is a crucial crop with a significant economic impact globally. However, postharvest
decay caused by fungal pathogens poses a considerable threat, leading to substantial …
decay caused by fungal pathogens poses a considerable threat, leading to substantial …
Functional annotation and comparative genomics analysis of Balamuthia mandrillaris reveals potential virulence-related genes
Balamuthia mandrillaris is a pathogenic protozoan that causes a rare but almost always fatal
infection of the central nervous system and, in some cases, cutaneous lesions. Currently, the …
infection of the central nervous system and, in some cases, cutaneous lesions. Currently, the …
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus—The Closest Ancestral Proxy of Antarctic …
The basal South American notothenioid Eleginops maclovinus (Patagonia blennie or
róbalo) occupies a uniquely important phylogenetic position in Notothenioidei as the …
róbalo) occupies a uniquely important phylogenetic position in Notothenioidei as the …
The genome of the cryopelagic Antarctic bald notothen, Trematomus borchgrevinki
N Rayamajhi, AG Rivera-Colón… - G3: Genes …, 2024 - academic.oup.com
Abstract The Antarctic bald notothen, Trematomus borchgrevinki (family Nototheniidae)
occupies a high latitude, ice-laden environment and represents an extreme example of cold …
occupies a high latitude, ice-laden environment and represents an extreme example of cold …