From microbiome composition to functional engineering, one step at a time
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics
The critical role of the intestinal microbiota in human health and disease is well recognized.
Nevertheless, there are still large gaps in our understanding of the functions and …
Nevertheless, there are still large gaps in our understanding of the functions and …
Biosensor-assisted titratable CRISPRi high-throughput (BATCH) screening for over-production phenotypes
With rapid advances in the development of metabolic pathways and synthetic biology
toolkits, a persisting challenge in microbial bioproduction is how to optimally rewire …
toolkits, a persisting challenge in microbial bioproduction is how to optimally rewire …
CRISPR-based approaches for gene regulation in non-model bacteria
SN Call, LB Andrews - Frontiers in genome editing, 2022 - frontiersin.org
CRISPR interference (CRISPRi) and CRISPR activation (CRISPRa) have become
ubiquitous approaches to control gene expression in bacteria due to their simple design and …
ubiquitous approaches to control gene expression in bacteria due to their simple design and …
A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection
X Liu, L Van Maele, L Matarazzo, D Soulard… - Cell Host & Microbe, 2024 - cell.com
Several vaccines targeting bacterial pathogens show reduced efficacy upon concurrent viral
infection, indicating that a new vaccinology approach is required. To identify antigens for the …
infection, indicating that a new vaccinology approach is required. To identify antigens for the …
Competence remodels the pneumococcal cell wall exposing key surface virulence factors that mediate increased host adherence
V Minhas, A Domenech, D Synefiaridou… - PLoS …, 2023 - journals.plos.org
Competence development in the human pathogen Streptococcus pneumoniae controls
several features such as genetic transformation, biofilm formation, and virulence. Competent …
several features such as genetic transformation, biofilm formation, and virulence. Competent …
[HTML][HTML] Toothpicks, logic, and next-generation sequencing: systematic investigation of bacteriophage-host interactions
A Shaidullina, A Harms - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phage-host interactions have mostly been studied one-by-one using few old
models.•Systematic approaches reveal new molecular mechanisms of phage-host …
models.•Systematic approaches reveal new molecular mechanisms of phage-host …
[HTML][HTML] Genome-scale CRISPRi screening: a powerful tool in engineering microbiology
L Sun, P Zheng, J Sun, VF Wendisch, Y Wang - Engineering Microbiology, 2023 - Elsevier
Deciphering gene function is fundamental to engineering of microbiology. The clustered
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …
An efficient in vivo-inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies
While genome-wide transposon mutagenesis screens have identified numerous essential
genes in the significant human pathogen Streptococcus pyogenes (group A Streptococcus …
genes in the significant human pathogen Streptococcus pyogenes (group A Streptococcus …
Exploring and engineering PAM-diverse Streptococci Cas9 for PAM-directed bifunctional and titratable gene control in bacteria
The RNA-guided Cas9s serve as powerful tools for programmable gene editing and
regulation; their targeting scopes and efficacies, however, are always constrained by the …
regulation; their targeting scopes and efficacies, however, are always constrained by the …