Notch signalling in context

SJ Bray - Nature reviews Molecular cell biology, 2016 - nature.com
The highly conserved Notch signalling pathway functions in many different developmental
and homeostatic processes, which raises the question of how this pathway can achieve …

Defining cell types and states with single-cell genomics

C Trapnell - Genome research, 2015 - genome.cshlp.org
A revolution in cellular measurement technology is under way: For the first time, we have the
ability to monitor global gene regulation in thousands of individual cells in a single …

Programming self-organizing multicellular structures with synthetic cell-cell signaling

S Toda, LR Blauch, SKY Tang, L Morsut, WA Lim - Science, 2018 - science.org
A common theme in the self-organization of multicellular tissues is the use of cell-cell
signaling networks to induce morphological changes. We used the modular synNotch …

Multi-scale modeling of tissues using CompuCell3D

MH Swat, GL Thomas, JM Belmonte, A Shirinifard… - Methods in cell …, 2012 - Elsevier
The study of how cells interact to produce tissue development, homeostasis, or diseases
was, until recently, almost purely experimental. Now, multi-cell computer simulation …

[图书][B] Physical biology of the cell

R Phillips, J Kondev, J Theriot, H Garcia - 2012 - taylorfrancis.com
Physical Biology of the Cell is a textbook for a first course in physical biology or biophysics
for undergraduate or graduate students. It maps the huge and complex landscape of cell …

Cis-interactions between Notch and Delta generate mutually exclusive signalling states

D Sprinzak, A Lakhanpal, L LeBon, LA Santat… - Nature, 2010 - nature.com
Abstract The Notch–Delta signalling pathway allows communication between neighbouring
cells during development. It has a critical role in the formation of 'fine-grained'patterns …

Geometric morphometrics of developmental instability: analyzing patterns of fluctuating asymmetry with Procrustes methods

CP Klingenberg, GS McIntyre - Evolution, 1998 - academic.oup.com
Although fluctuating asymmetry has become popular as a measure of developmental
instability, few studies have examined its developmental basis. We propose an approach to …

Chaste: an open source C++ library for computational physiology and biology

GR Mirams, CJ Arthurs, MO Bernabeu… - PLoS computational …, 2013 - journals.plos.org
Chaste—C ancer, H eart A nd S oft T issue E nvironment—is an open source C++ library for
the computational simulation of mathematical models developed for physiology and biology …

[PDF][PDF] Bistability, bifurcations, and Waddington's epigenetic landscape

JE Ferrell - Current biology, 2012 - cell.com
Waddington's epigenetic landscape is probably the most famous and most powerful
metaphor in developmental biology. Cells, represented by balls, roll downhill through a …

Comparing individual-based approaches to modelling the self-organization of multicellular tissues

JM Osborne, AG Fletcher, JM Pitt-Francis… - PLoS computational …, 2017 - journals.plos.org
The coordinated behaviour of populations of cells plays a central role in tissue growth and
renewal. Cells react to their microenvironment by modulating processes such as movement …