DNA compaction: fundamentals and applications

A Estévez-Torres, D Baigl - Soft Matter, 2011 - pubs.rsc.org
Compaction is the process in which a large DNA molecule undergoes a transition between
an elongated conformation and a very compact form. In nature, DNA compaction occurs to …

Versatile electrostatic assembly of nanoparticles and polyelectrolytes: Coating, clustering and layer-by-layer processes

JP Chapel, JF Berret - Current opinion in colloid & interface science, 2012 - Elsevier
Engineered nanoparticles made from noble metals, rare-earth oxides or semiconductors are
emerging as the central constituents of future nanotech developments. In this review, a …

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization

CA Brackley, S Taylor, A Papantonis… - Proceedings of the …, 2013 - National Acad Sciences
Molecular dynamics simulations are used to model proteins that diffuse to DNA, bind, and
dissociate; in the absence of any explicit interaction between proteins, or between …

Binding characteristics and molecular mechanism of interaction between ionic liquid and DNA

Y Ding, L Zhang, J Xie, R Guo - The Journal of Physical Chemistry …, 2010 - ACS Publications
The binding characteristics and molecular mechanism of the interaction between a typical
ionic liquid (IL), 1-butyl-3-methylimidazolium chloride ([bmim] Cl), as a green solvent and …

Photosensitive surfactants with various hydrophobic tail lengths for the photocontrol of genomic DNA conformation with improved efficiency

A Diguet, NK Mani, M Geoffroy… - … A European Journal, 2010 - Wiley Online Library
We report the synthesis and characterisation of photosensitive cationic surfactants with
various hydrophobic tail lengths. These molecules, called AzoCx, are used as …

Compaction and decompaction of DNA induced by the cationic surfactant CTAB

E Grueso, C Cerrillos, J Hidalgo, P Lopez-Cornejo - Langmuir, 2012 - ACS Publications
A multifaceted study on the interaction of the cationic surfactant CTAB with calf thymus DNA
was carried out by using different techniques. The measurements were done at different …

A kinetic study of the interaction of DNA with gold nanoparticles: mechanistic aspects of the interaction

R Prado-Gotor, E Grueso - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
A kinetic study of the interaction of gold nanoparticles capped with N-(2-mercaptopropionyl)
glycine with double stranded DNA was carried out in water and in salt (NaCl) solutions. The …

Rational design and characterisation of an amphipathic cell penetrating peptide for non-viral gene delivery

EM McErlean, CM McCrudden, JW McBride… - International Journal of …, 2021 - Elsevier
RALA is a cationic amphipathic peptide which has shown great promise as an efficient,
multifunctional delivery system for the delivery of nucleic acids. Rational peptide design was …

Characterization of nucleic acid compaction with histone-mimic nanoparticles through all-atom molecular dynamics

JA Nash, A Singh, NK Li, YG Yingling - Acs Nano, 2015 - ACS Publications
The development of nucleic acid (NA) based nanotechnology applications rely on the
efficient packaging of DNA and RNA. However, the atomic details of NA–nanoparticle …

Understanding and improving aggregated gold nanoparticle/dsDNA interactions by molecular spectroscopy and deconvolution methods

JM Carnerero, A Jimenez-Ruiz, EM Grueso… - Physical Chemistry …, 2017 - pubs.rsc.org
It is well known that single-stranded DNA (ssDNA) is easily able to adsorb on citrate-capped,
non-functionalized gold nanoparticles (AuNPs). However, the affinity of double-stranded …