Control theory meets synthetic biology
The past several years have witnessed an increased presence of control theoretic concepts
in synthetic biology. This review presents an organized summary of how these control …
in synthetic biology. This review presents an organized summary of how these control …
Programmable protein circuit design
Z Chen, MB Elowitz - Cell, 2021 - cell.com
A fundamental challenge in synthetic biology is to create molecular circuits that can program
complex cellular functions. Because proteins can bind, cleave, and chemically modify one …
complex cellular functions. Because proteins can bind, cleave, and chemically modify one …
A universal biomolecular integral feedback controller for robust perfect adaptation
Homeostasis is a recurring theme in biology that ensures that regulated variables robustly—
and in some systems, completely—adapt to environmental perturbations. This robust perfect …
and in some systems, completely—adapt to environmental perturbations. This robust perfect …
Applications and advances of metabolite biosensors for metabolic engineering
Quantification and regulation of pathway metabolites is crucial for optimization of microbial
production bioprocesses. Genetically encoded biosensors provide the means to couple …
production bioprocesses. Genetically encoded biosensors provide the means to couple …
A quasi-integral controller for adaptation of genetic modules to variable ribosome demand
The behavior of genetic circuits is often poorly predictable. A gene's expression level is not
only determined by the intended regulators, but also affected by changes in ribosome …
only determined by the intended regulators, but also affected by changes in ribosome …
A cybergenetic framework for engineering intein-mediated integral feedback control systems
The ability of biological systems to tightly regulate targeted variables, despite external and
internal disturbances, is known as Robust Perfect Adaptation (RPA). Achieved frequently …
internal disturbances, is known as Robust Perfect Adaptation (RPA). Achieved frequently …
A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance
Abstract Proportional-Integral-Derivative (PID) feedback controllers are the most widely used
controllers in industry. Recently, the design of molecular PID-controllers has been identified …
controllers in industry. Recently, the design of molecular PID-controllers has been identified …
[HTML][HTML] Context-aware synthetic biology by controller design: Engineering the mammalian cell
The rise of systems biology has ushered a new paradigm: the view of the cell as a system
that processes environmental inputs to drive phenotypic outputs. Synthetic biology provides …
that processes environmental inputs to drive phenotypic outputs. Synthetic biology provides …
[HTML][HTML] Biomolecular feedback controllers: from theory to applications
Highlights•Synthetic biomolecular feedback controllers have promising applications in
various fields.•Negative-feedback controllers enhance dynamic performance and reduce …
various fields.•Negative-feedback controllers enhance dynamic performance and reduce …
Cybergenetics: Theory and applications of genetic control systems
MH Khammash - Proceedings of the IEEE, 2022 - ieeexplore.ieee.org
There is no design template more important than DNA. Within the sequences of this
exquisite substance lie the design plans for each of us and for every living organism …
exquisite substance lie the design plans for each of us and for every living organism …