Principles of genetic circuit design

JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …

[HTML][HTML] Dynamic control in metabolic engineering: Theories, tools, and applications

CJ Hartline, AC Schmitz, Y Han, F Zhang - Metabolic engineering, 2021 - Elsevier
Metabolic engineering has allowed the production of a diverse number of valuable
chemicals using microbial organisms. Many biological challenges for improving bio …

Transcription-factor-based biosensor engineering for applications in synthetic biology

N Ding, S Zhou, Y Deng - ACS Synthetic Biology, 2021 - ACS Publications
Transcription-factor-based biosensors (TFBs) are often used for metabolite detection,
adaptive evolution, and metabolic flux control. However, designing TFBs with superior …

Protein engineering for improving and diversifying natural product biosynthesis

C Li, R Zhang, J Wang, LM Wilson, Y Yan - Trends in biotechnology, 2020 - cell.com
Proteins found in nature have traditionally been the most frequently used biocatalysts to
produce numerous natural products ranging from commodity chemicals to pharmaceuticals …

Biosensor-based engineering of biosynthetic pathways

JK Rogers, ND Taylor, GM Church - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Harnessing cellular processes to produce valuable metabolic products is of
growing economic importance.•However, biological complexity necessitates many attempts …

Refactoring transcription factors for metabolic engineering

C Deng, Y Wu, X Lv, J Li, Y Liu, G Du, J Chen… - Biotechnology …, 2022 - Elsevier
Due to the ability to regulate target metabolic pathways globally and dynamically, metabolic
regulation systems composed of transcription factors have been widely used in metabolic …

Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis

Y Xiao, CH Bowen, D Liu, F Zhang - Nature chemical biology, 2016 - nature.com
Biosynthesis enables renewable production of manifold compounds, yet often biosynthetic
performance must be improved for it to be economically feasible. Nongenetic, cell-to-cell …

Transcription factor-based biosensors in biotechnology: current state and future prospects

R Mahr, J Frunzke - Applied microbiology and biotechnology, 2016 - Springer
Living organisms have evolved a plethora of sensing systems for the intra-and extracellular
detection of small molecules, ions or physical parameters. Several recent studies have …

Fundamental design principles for transcription-factor-based metabolite biosensors

AA Mannan, D Liu, F Zhang, DA Oyarzún - ACS synthetic biology, 2017 - ACS Publications
Metabolite biosensors are central to current efforts toward precision engineering of
metabolism. Although most research has focused on building new biosensors, their …

Applications and advances of metabolite biosensors for metabolic engineering

D Liu, T Evans, F Zhang - Metabolic engineering, 2015 - Elsevier
Quantification and regulation of pathway metabolites is crucial for optimization of microbial
production bioprocesses. Genetically encoded biosensors provide the means to couple …