Opportunities and challenges in phenotypic drug discovery: an industry perspective
Phenotypic drug discovery (PDD) approaches do not rely on knowledge of the identity of a
specific drug target or a hypothesis about its role in disease, in contrast to the target-based …
specific drug target or a hypothesis about its role in disease, in contrast to the target-based …
Apparent activity in high-throughput screening: origins of compound-dependent assay interference
N Thorne, DS Auld, J Inglese - Current opinion in chemical biology, 2010 - Elsevier
Expansive compound collections made up of structurally heterogeneous chemicals, the
activities of which are largely undefined, present challenging problems for high-throughput …
activities of which are largely undefined, present challenging problems for high-throughput …
PRESTO-Tango as an open-source resource for interrogation of the druggable human GPCRome
G protein–coupled receptors (GPCRs) are essential mediators of cellular signaling and are
important targets of drug action. Of the approximately 350 nonolfactory human GPCRs, more …
important targets of drug action. Of the approximately 350 nonolfactory human GPCRs, more …
New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays
JB Baell, GA Holloway - Journal of medicinal chemistry, 2010 - ACS Publications
This report describes a number of substructural features which can help to identify
compounds that appear as frequent hitters (promiscuous compounds) in many biochemical …
compounds that appear as frequent hitters (promiscuous compounds) in many biochemical …
PAINS in the assay: chemical mechanisms of assay interference and promiscuous enzymatic inhibition observed during a sulfhydryl-scavenging HTS
JL Dahlin, JWM Nissink, JM Strasser… - Journal of medicinal …, 2015 - ACS Publications
Significant resources in early drug discovery are spent unknowingly pursuing artifacts and
promiscuous bioactive compounds, while understanding the chemical basis for these …
promiscuous bioactive compounds, while understanding the chemical basis for these …
The NCGC pharmaceutical collection: a comprehensive resource of clinically approved drugs enabling repurposing and chemical genomics
R Huang, N Southall, Y Wang, A Yasgar… - Science translational …, 2011 - science.org
Small-molecule compounds approved for use as drugs may be “repurposed” for new
indications and studied to determine the mechanisms of their beneficial and adverse effects …
indications and studied to determine the mechanisms of their beneficial and adverse effects …
Illuminating insights into firefly luciferase and other bioluminescent reporters used in chemical biology
N Thorne, J Inglese, DS Auld - Chemistry & biology, 2010 - cell.com
Understanding luciferase enzymology and the structure of compounds that modulate
luciferase activity can be used to improve the design of luminescence-based assays. This …
luciferase activity can be used to improve the design of luminescence-based assays. This …
Maximum unbiased validation (MUV) data sets for virtual screening based on PubChem bioactivity data
SG Rohrer, K Baumann - Journal of chemical information and …, 2009 - ACS Publications
Refined nearest neighbor analysis was recently introduced for the analysis of virtual
screening benchmark data sets. It constitutes a technique from the field of spatial statistics …
screening benchmark data sets. It constitutes a technique from the field of spatial statistics …
[HTML][HTML] Considerations for the design and reporting of enzyme assays in high-throughput screening applications
MG Acker, DS Auld - Perspectives in Science, 2014 - Elsevier
This review describes the key steps and methods which are used to develop enzyme assays
suitable for high-throughput screening (HTS) applications. The goals of HTS enzyme assays …
suitable for high-throughput screening (HTS) applications. The goals of HTS enzyme assays …
The future of toxicity testing: a focus on in vitro methods using a quantitative high-throughput screening platform
SJ Shukla, R Huang, CP Austin, M Xia - Drug discovery today, 2010 - Elsevier
The US Tox21 collaborative program represents a paradigm shift in toxicity testing of
chemical compounds from traditional in vivo tests to less expensive and higher throughput in …
chemical compounds from traditional in vivo tests to less expensive and higher throughput in …