Microfluidics for long-term single-cell time-lapse microscopy: Advances and applications

P Allard, F Papazotos, L Potvin-Trottier - Frontiers in Bioengineering …, 2022 - frontiersin.org
Cells are inherently dynamic, whether they are responding to environmental conditions or
simply at equilibrium, with biomolecules constantly being made and destroyed. Due to their …

Bacterial degrons in synthetic circuits

P Jadhav, Y Chen, N Butzin, J Buceta… - Open …, 2022 - royalsocietypublishing.org
Bacterial proteases are a promising post-translational regulation strategy in synthetic circuits
because they recognize specific amino acid degradation tags (degrons) that can be fine …

Modulating biological rhythms: A noncomputational strategy harnessing nonlinearity and decoupling frequency and amplitude

Z Zhong, W Lin, BW Qin - Physical Review Letters, 2023 - APS
Understanding and achieving concurrent modulation of amplitude and frequency,
particularly adjusting one quantity and simultaneously sustaining the other at an invariant …

Condition for periodic attractor in 4-dimensional repressilators

H Sun, M Folschette, M Magnin - International Conference on …, 2023 - Springer
One of the key questions about gene regulatory networks is how to predict complex
dynamical properties based on the influence graph's topology. Earlier theoretical studies …

Two-Layered Microfluidic Devices for High-Throughput Dynamic Analysis of Synthetic Gene Circuits in E. coli

Y Sun, F Zhang, L Li, K Chen, S Wang… - ACS Synthetic …, 2022 - ACS Publications
Escherichia coli is a common chassis for synthetic gene circuit studies. In addition to the
dose–response of synthetic gene circuits, the analysis of dynamic responses is also an …

A mathematical framework for measuring and tuning tempo in developmental gene regulatory networks

CL Manser, R Perez-Carrasco - Development, 2024 - journals.biologists.com
Embryo development is a dynamic process governed by the regulation of timing and
sequences of gene expression, which control the proper growth of the organism. While …

The dynamic-process characterization and prediction of synthetic gene circuits by dynamic delay model

Y Sun, F Zhang, Q Ouyang, C Luo - Iscience, 2024 - cell.com
Differential equation models are widely used to describe genetic regulations, predict
multicomponent regulatory circuits, and provide quantitative insights. However, it is still …

Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks

S Riva, JM Lagniez, GM López, L Paulevé - International Conference on …, 2023 - Springer
Minimal trap spaces (MTSs) capture subspaces in which the Boolean dynamics is trapped,
whatever the update mode. They correspond to the attractors of the most permissive mode …

An oscillating reaction network with an exact closed form solution in the time domain

J Hellerstein - BMC bioinformatics, 2023 - Springer
Background Oscillatory behavior is critical to many life sustaining processes such as cell
cycles, circadian rhythms, and notch signaling. Important biological functions depend on the …

细胞编程技术: 助力高效细胞工厂的设计.

琚康辉, 田晓雅, 王立, 陈晶瑜 - Biotechnology Bulletin, 2024 - search.ebscohost.com
合成生物学是近年来蓬勃发展的一门涉及分子生物学, 生物工程, 微生物学,
系统生物学等多个学科新型交叉学科, 旨在利用生物学原理和工程方法创造全新的生物学系统和 …