Metadynamics
A Barducci, M Bonomi… - Wiley Interdisciplinary …, 2011 - Wiley Online Library
Metadynamics is a powerful technique for enhancing sampling in molecular dynamics
simulations and reconstructing the free‐energy surface as a function of few selected …
simulations and reconstructing the free‐energy surface as a function of few selected …
QM/MM methods for biomolecular systems
HM Senn, W Thiel - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Two are better than one: Quantum mechanics/molecular mechanics (QM/MM) methods are
the state‐of‐the‐art computational technique for treating reactive and other “electronic” …
the state‐of‐the‐art computational technique for treating reactive and other “electronic” …
Photoinduced chemomimetic biocatalysis for enantioselective intermolecular radical conjugate addition
Exploiting nature's catalysts for non-natural transformations that are inaccessible to
chemocatalysis is highly desirable but challenging. On the one hand, the widespread …
chemocatalysis is highly desirable but challenging. On the one hand, the widespread …
Full atomistic reaction mechanism with kinetics for CO reduction on Cu (100) from ab initio molecular dynamics free-energy calculations at 298 K
A critical step toward the rational design of new catalysts that achieve selective and efficient
reduction of CO2 to specific hydrocarbons and oxygenates is to determine the detailed …
reduction of CO2 to specific hydrocarbons and oxygenates is to determine the detailed …
Reaction Mechanisms for the Electrochemical Reduction of CO2 to CO and Formate on the Cu(100) Surface at 298 K from Quantum Mechanics Free Energy …
Copper is the only elemental metal that reduces a significant fraction of CO2 to
hydrocarbons and alcohols, but the atomistic reaction mechanism that controls the product …
hydrocarbons and alcohols, but the atomistic reaction mechanism that controls the product …
Electrochemical CO reduction builds solvent water into oxygenate products
Numerous studies have examined the electrochemical reduction of CO (COR) to oxygenates
(eg, ethanol). None have considered the possibility that oxygen in the product might arise …
(eg, ethanol). None have considered the possibility that oxygen in the product might arise …
Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science
A Laio, FL Gervasio - Reports on Progress in Physics, 2008 - iopscience.iop.org
Metadynamics is a powerful algorithm that can be used both for reconstructing the free
energy and for accelerating rare events in systems described by complex Hamiltonians, at …
energy and for accelerating rare events in systems described by complex Hamiltonians, at …
Covalent mechanochemistry: theoretical concepts and computational tools with applications to molecular nanomechanics
J Ribas-Arino, D Marx - Chemical reviews, 2012 - ACS Publications
In the following section, we will recapitulate selected experimental milestones through the
eyes of the theoretician, which, in our opinion, significantly advanced the field of covalent …
eyes of the theoretician, which, in our opinion, significantly advanced the field of covalent …
Operando modeling of zeolite-catalyzed reactions using first-principles molecular dynamics simulations
Within this Perspective, we critically reflect on the role of first-principles molecular dynamics
(MD) simulations in unraveling the catalytic function within zeolites under operating …
(MD) simulations in unraveling the catalytic function within zeolites under operating …
The molecular mechanism of the catalase reaction
M Alfonso-Prieto, X Biarnés, P Vidossich… - Journal of the …, 2009 - ACS Publications
Catalases are ubiquitous enzymes that prevent cell oxidative damage by degrading
hydrogen peroxide to water and oxygen (2H2O2→ 2 H2O+ O2) with high efficiency. The …
hydrogen peroxide to water and oxygen (2H2O2→ 2 H2O+ O2) with high efficiency. The …