Genomics and marker-assisted improvement of vegetable crops

I Simko, M Jia, J Venkatesh, BC Kang… - Critical Reviews in …, 2021 - Taylor & Francis
Vegetables are an integral part of the human diet worldwide. Traditional breeding
approaches have been used extensively to develop new cultivars of vegetables with …

Evolutionary dynamics and adaptive benefits of deleterious mutations in crop gene pools

SL Dwivedi, P Heslop-Harrison, C Spillane… - Trends in Plant …, 2023 - cell.com
Mutations with deleterious consequences in nature may be conditionally deleterious in crop
plants. That is, while some genetic variants may reduce fitness under wild conditions and be …

Past and future use of wild relatives in crop breeding

H Dempewolf, G Baute, J Anderson, B Kilian… - Crop …, 2017 - Wiley Online Library
Wild species related to agricultural crops (crop wild relatives, or CWR) can increase the
adaptive capacity of agricultural systems around the world. They represent a large pool of …

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

AM Hulse-Kemp, S Maheshwari, K Stoffel… - Horticulture …, 2018 - academic.oup.com
Linked-Read sequencing technology has recently been employed successfully for de novo
assembly of human genomes, however, the utility of this technology for complex plant …

Sequencing‐based bin map construction of a tomato mapping population, facilitating high‐resolution quantitative trait loci detection

I Gonda, H Ashrafi, DA Lyon, SR Strickler… - The plant …, 2019 - Wiley Online Library
Genotyping‐by‐sequencing (GBS) was employed to construct a highly saturated genetic
linkage map of a tomato (Solanum lycopersicum L.) recombinant inbred line (RIL) …

Whole-Genome Resequencing of Seven Eggplant (Solanum melongena) and One Wild Relative (S. incanum) Accessions Provides New Insights and Breeding …

P Gramazio, H Yan, T Hasing, S Vilanova… - Frontiers in plant …, 2019 - frontiersin.org
Whole-genome resequencing provides information of great relevance for crop genetics,
evolution, and breeding. Here, we present the first whole-genome resequencing study using …

High-quality chromosome-scale genomes facilitate effective identification of large structural variations in hot and sweet peppers

JH Lee, J Venkatesh, J Jo, S Jang, GW Kim… - Horticulture …, 2022 - academic.oup.com
Pepper (Capsicum annuum) is an important vegetable crop that has been subjected to
intensive breeding, resulting in limited genetic diversity, especially for sweet peppers …

Genetic diversity, population structure and genetic parameters of fruit traits in Capsicum chinense

AFP Moreira, PM Ruas, C de Fátima Ruas, VY Baba… - Scientia …, 2018 - Elsevier
The fruits of Capsicum chinense stand out with a wide diversity of sizes, colors, shapes, and
levels of pungency. Knowledge about this variability is essential for the success in species …

Capsicum—An abbreviated compendium

RL Jarret, GE Barboza… - Journal of the …, 2019 - journals.ashs.org
Pepper (Capsicum L.) is a major vegetable and spice crop worldwide. Global production of
both fresh and dried fruit continues to increase steadily in terms of area harvested and yield …

Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

EE Delorean, RC Youngblood, SA Simpson… - Frontiers in Plant …, 2023 - frontiersin.org
As sequencing costs decrease and availability of high fidelity long-read sequencing
increases, generating experiment specific de novo genome assemblies becomes feasible …