Variation in recombination frequency and distribution across eukaryotes: patterns and processes

J Stapley, PGD Feulner… - … of the Royal …, 2017 - royalsocietypublishing.org
Recombination, the exchange of DNA between maternal and paternal chromosomes during
meiosis, is an essential feature of sexual reproduction in nearly all multicellular organisms …

[HTML][HTML] Symposium review: Possibilities in an age of genomics: The future of selection indices

JB Cole, PM VanRaden - Journal of dairy science, 2018 - Elsevier
Selective breeding has been practiced since domestication, but early breeders commonly
selected on appearance (eg, coat color) rather than performance traits (eg, milk yield). A …

De novo assembly of the cattle reference genome with single-molecule sequencing

BD Rosen, DM Bickhart, RD Schnabel, S Koren… - …, 2020 - academic.oup.com
Background Major advances in selection progress for cattle have been made following the
introduction of genomic tools over the past 10–12 years. These tools depend upon the Bos …

Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle

HP Doekes, RF Veerkamp, P Bijma, G de Jong… - Genetics Selection …, 2019 - Springer
Background Inbreeding decreases animal performance (inbreeding depression), but not all
inbreeding is expected to be equally harmful. Recent inbreeding is expected to be more …

[HTML][HTML] Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability

JT Howard, JE Pryce, C Baes, C Maltecca - Journal of dairy science, 2017 - Elsevier
Traditionally, pedigree-based relationship coefficients have been used to manage the
inbreeding and degree of inbreeding depression that exists within a population. The …

A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

W Gorssen, R Meyermans, S Janssens… - Genetics Selection …, 2021 - Springer
Background Runs of homozygosity (ROH) have become the state-of-the-art method for
analysis of inbreeding in animal populations. Moreover, ROH are suited to detect signatures …

Understanding the genetic basis of variation in meiotic recombination: past, present, and future

SE Johnston - Molecular Biology and Evolution, 2024 - academic.oup.com
Meiotic recombination is a fundamental feature of sexually reproducing species. It is often
required for proper chromosome segregation and plays important role in adaptation and the …

The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics

AL Lewanski, MC Grundler, GS Bradburd - PLoS Genetics, 2024 - journals.plos.org
In the presence of recombination, the evolutionary relationships between a set of sampled
genomes cannot be described by a single genealogical tree. Instead, the genomes are …

Meta‐analysis of chromosome‐scale crossover rate variation in eukaryotes and its significance to evolutionary genomics

Q Haenel, TG Laurentino, M Roesti… - Molecular ecology, 2018 - Wiley Online Library
Understanding the distribution of crossovers along chromosomes is crucial to evolutionary
genomics because the crossover rate determines how strongly a genome region is …

PRDM9 and its role in genetic recombination

K Paigen, PM Petkov - Trends in Genetics, 2018 - cell.com
PRDM9 is a zinc finger protein that binds DNA at specific locations in the genome where it
trimethylates histone H3 at lysines 4 and 36 at surrounding nucleosomes. During meiosis in …