Non-coding RNAs (ncRNA) are essential for all life, and their functions often depend on their
secondary (2D) and tertiary structure. Despite the abundance of software for the …

Two-dimensional drawing of nucleic acid structures, particularly RNA structures, is
fundamental to the communication of nucleic acids research. However, manually drawing …

TnpB is a member of the Obligate Mobile Element Guided Activity (OMEGA) RNA-guided
nuclease family, is harbored in transposons, and likely functions to maintain the transposon …

RNA structure plays a crucial role in gene regulation, in RNA stability and the essential
biological processes. RNA secondary structure (RSS) motifs are the basic building blocks for …

RNA binding proteins and messenger RNAs (mRNAs) assemble into ribonucleoprotein
granules that regulate mRNA trafficking, local translation, and turnover. The dysregulation of …

Analyzing and visualizing the tertiary structure and complex interactions of RNA is essential
for being able to mechanistically decipher their molecular functions in vivo. Secondary …

Generalized Pythagoras trees were developed for visualizing hierarchical data, producing
organic, fractal-like representations. However, the drawback of the original layout algorithm …

Generating networks with desired degree distribution is an important topic of research in
network science. Often network researchers need to perform empirical experiments on …

Mining and analyzing the information and structure of DNA sequences is an important
method of exploring and explaining the mysteries of biology. In addition to traditional …

Abstract Publishing, discussing, envisioning, modeling, designing and experimentally
determining RNA three-dimensional (3D) structures involve preparation of two-dimensional …