Liquid–liquid phase separation in chromatin

K Rippe - Cold Spring Harbor perspectives in biology, 2022 - cshperspectives.cshlp.org
In eukaryotic cells, protein and RNA factors involved in genome activities like transcription,
RNA processing, DNA replication, and repair accumulate in self-organizing membraneless …

[HTML][HTML] Jpx RNA activates Xist by evicting CTCF

S Sun, BC Del Rosario, A Szanto, Y Ogawa, Y Jeon… - Cell, 2013 - cell.com
In mammals, dosage compensation between XX and XY individuals occurs through X
chromosome inactivation (XCI). The noncoding Xist RNA is expressed and initiates XCI only …

Multifaceted transcriptional network of estrogen-related receptor alpha in health and disease

C Cerutti, JR Shi, JM Vanacker - International Journal of Molecular …, 2023 - mdpi.com
Estrogen-related receptors (ERRα, β and γ in mammals) are orphan members of the nuclear
receptor superfamily acting as transcription factors. ERRs are expressed in several cell …

Concentration-dependent transcriptional switching through a collective action of cis-elements

K Rodriguez, A Do, B Senay-Aras, M Perales… - Science …, 2022 - science.org
Gene expression specificity of homeobox transcription factors has remained paradoxical.
WUSCHEL activates and represses CLAVATA3 transcription at lower and higher …

Robust and tunable signal processing in mammalian cells via engineered covalent modification cycles

RD Jones, Y Qian, K Ilia, B Wang, MT Laub… - Nature …, 2022 - nature.com
Engineered signaling networks can impart cells with new functionalities useful for directing
differentiation and actuating cellular therapies. For such applications, the engineered …

[HTML][HTML] Multimerization of HIF enhances transcription of target genes containing the hypoxia ancillary sequence

T Rosell-Garcia, S Rivas-Muñoz, K Kin… - … et Biophysica Acta (BBA …, 2023 - Elsevier
Transcriptional activity of the hypoxia inducible factor (HIF) relies on the formation of a
heterodimer composed of an oxygen-regulated α-subunit and a stably expressed β-subunit …

Biologically inspired bio-cyber interface architecture and model for Internet of bio-nanothings applications

UAK Chude-Okonkwo, R Malekian… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
With the advent of nanotechnology, concepts related to the Internet of Things, such as the
Internet of NanoThings and Internet of Bio-NanoThings (IoBNT) have also emerged in the …

Stochastic models of transcription: From single molecules to single cells

A Sanchez, S Choubey, J Kondev - Methods, 2013 - Elsevier
Genes in prokaryotic and eukaryotic cells are typically regulated by complex promoters
containing multiple binding sites for a variety of transcription factors leading to a specific …

Noise and information transmission in promoters with multiple internal states

G Rieckh, G Tkačik - Biophysical journal, 2014 - cell.com
Based on the measurements of noise in gene expression performed during the past decade,
it has become customary to think of gene regulation in terms of a two-state model, where the …

Gestational age-dependent changes in gene expression of metabolic enzymes and transporters in pregnant mice

DL Shuster, TK Bammler, RP Beyer… - Drug metabolism and …, 2013 - Elsevier
Pregnancy-induced changes in drug pharmacokinetics can be explained by changes in
expression of drug-metabolizing enzymes and transporters and/or normal physiology. In this …