RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Asymmetric catalysis by chiral hydrogen‐bond donors

MS Taylor, EN Jacobsen - Angewandte Chemie International …, 2006 - Wiley Online Library
Hydrogen bonding is responsible for the structure of much of the world around us. The
unusual and complex properties of bulk water, the ability of proteins to fold into stable three …

Engineered extracellular vesicles as versatile ribonucleoprotein delivery vehicles for efficient and safe CRISPR genome editing

X Yao, P Lyu, K Yoo, MK Yadav… - Journal of …, 2021 - Wiley Online Library
Transient delivery of CRISPR‐based genome editing effectors is important to reduce off‐
target effects and immune responses. Recently extracellular vesicles (EVs) have been …

[HTML][HTML] Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates

RR Poudyal, RM Guth-Metzler, AJ Veenis… - Nature …, 2019 - nature.com
Membraneless compartments, such as complex coacervates, have been hypothesized as
plausible prebiotic micro-compartments due to their ability to sequester RNA; however, their …

Self‐processing of ribozyme‐flanked RNAs into guide RNAs in vitro and in vivo for CRISPR‐mediated genome editing

Y Gao, Y Zhao - Journal of integrative plant biology, 2014 - Wiley Online Library
CRISPR/Cas9 uses a guide RNA (gRNA) molecule to execute sequence‐specific DNA
cleavage and it has been widely used for genome editing in many organisms. Modifications …

The structural basis of ribosome activity in peptide bond synthesis

P Nissen, J Hansen, N Ban, PB Moore, TA Steitz - Science, 2000 - science.org
Using the atomic structures of the large ribosomal subunit from Haloarcula marismortui and
its complexes with two substrate analogs, we establish that the ribosome is a ribozyme and …

The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks

SE Butcher, AM Pyle - Accounts of chemical research, 2011 - ACS Publications
RNA molecules adopt specific three-dimensional structures critical to their function. Many
essential metabolic processes, including protein synthesis and RNA splicing, are carried out …

The chemical repertoire of natural ribozymes

JA Doudna, TR Cech - Nature, 2002 - nature.com
Although RNA is generally thought to be a passive genetic blueprint, some RNA molecules,
called ribozymes, have intrinsic enzyme-like activity—they can catalyse chemical reactions …

Critical roles of activation-induced cytidine deaminase in the homeostasis of gut flora

S Fagarasan, M Muramatsu, K Suzuki, H Nagaoka… - Science, 2002 - science.org
Activation-induced cytidine deaminase (AID) plays an essential role in class switch
recombination (CSR) and somatic hypermutation (SHM) of immunoglobulin genes. We …

The ribosome is a ribozyme

TR Cech - Science, 2000 - science.org
The amino acids we obtain by digestion of steak, salmon, or a lettuce salad are loaded onto
transfer RNAs (tRNAs) and rebuilt into proteins in the ribosome [HN1], the cell's …