The evolution of genome mining in microbes–a review

N Ziemert, M Alanjary, T Weber - Natural product reports, 2016 - pubs.rsc.org
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …

Genome mining methods to discover bioactive natural products

KD Bauman, KS Butler, BS Moore… - Natural Product …, 2021 - pubs.rsc.org
Covering: 2016 to 2021 With genetic information available for hundreds of thousands of
organisms in publicly accessible databases, scientists have an unprecedented opportunity …

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation

K Blin, S Shaw, HE Augustijn, ZL Reitz… - Nucleic acids …, 2023 - academic.oup.com
Microorganisms produce small bioactive compounds as part of their secondary or
specialised metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal …

Predicting property prices with machine learning algorithms

WKO Ho, BS Tang, SW Wong - Journal of Property Research, 2021 - Taylor & Francis
This study uses three machine learning algorithms including, support vector machine (SVM),
random forest (RF) and gradient boosting machine (GBM) in the appraisal of property prices …

Computational approaches to natural product discovery

MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

K Blin, MH Medema, D Kazempour… - Nucleic acids …, 2013 - academic.oup.com
Microbial secondary metabolites are a potent source of antibiotics and other
pharmaceuticals. Genome mining of their biosynthetic gene clusters has become a key …

Mass spectral molecular networking of living microbial colonies

J Watrous, P Roach, T Alexandrov… - Proceedings of the …, 2012 - National Acad Sciences
Integrating the governing chemistry with the genomics and phenotypes of microbial colonies
has been a “holy grail” in microbiology. This work describes a highly sensitive, broadly …

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

MH Medema, K Blin, P Cimermancic… - Nucleic acids …, 2011 - academic.oup.com
Bacterial and fungal secondary metabolism is a rich source of novel bioactive compounds
with potential pharmaceutical applications as antibiotics, anti-tumor drugs or cholesterol …

NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity

M Röttig, MH Medema, K Blin, T Weber… - Nucleic acids …, 2011 - academic.oup.com
The products of many bacterial non-ribosomal peptide synthetases (NRPS) are highly
important secondary metabolites, including vancomycin and other antibiotics. The ability to …

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

N Ziemert, S Podell, K Penn, JH Badger, E Allen… - PloS one, 2012 - journals.plos.org
New bioinformatic tools are needed to analyze the growing volume of DNA sequence data.
This is especially true in the case of secondary metabolite biosynthesis, where the highly …