The evolution of genome mining in microbes–a review
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …
part in the discovery of novel natural products as drug leads. Thousands of bacterial …
Genome mining methods to discover bioactive natural products
Covering: 2016 to 2021 With genetic information available for hundreds of thousands of
organisms in publicly accessible databases, scientists have an unprecedented opportunity …
organisms in publicly accessible databases, scientists have an unprecedented opportunity …
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
Microorganisms produce small bioactive compounds as part of their secondary or
specialised metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal …
specialised metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal …
Predicting property prices with machine learning algorithms
This study uses three machine learning algorithms including, support vector machine (SVM),
random forest (RF) and gradient boosting machine (GBM) in the appraisal of property prices …
random forest (RF) and gradient boosting machine (GBM) in the appraisal of property prices …
Computational approaches to natural product discovery
MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …
genome mining has been captivating: genomics and bioinformatics would transform …
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
Microbial secondary metabolites are a potent source of antibiotics and other
pharmaceuticals. Genome mining of their biosynthetic gene clusters has become a key …
pharmaceuticals. Genome mining of their biosynthetic gene clusters has become a key …
Mass spectral molecular networking of living microbial colonies
J Watrous, P Roach, T Alexandrov… - Proceedings of the …, 2012 - National Acad Sciences
Integrating the governing chemistry with the genomics and phenotypes of microbial colonies
has been a “holy grail” in microbiology. This work describes a highly sensitive, broadly …
has been a “holy grail” in microbiology. This work describes a highly sensitive, broadly …
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
Bacterial and fungal secondary metabolism is a rich source of novel bioactive compounds
with potential pharmaceutical applications as antibiotics, anti-tumor drugs or cholesterol …
with potential pharmaceutical applications as antibiotics, anti-tumor drugs or cholesterol …
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
The products of many bacterial non-ribosomal peptide synthetases (NRPS) are highly
important secondary metabolites, including vancomycin and other antibiotics. The ability to …
important secondary metabolites, including vancomycin and other antibiotics. The ability to …
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
New bioinformatic tools are needed to analyze the growing volume of DNA sequence data.
This is especially true in the case of secondary metabolite biosynthesis, where the highly …
This is especially true in the case of secondary metabolite biosynthesis, where the highly …