[HTML][HTML] Simulation of FRET dyes allows quantitative comparison against experimental data
Fully understanding biomolecular function requires detailed insight into the systems'
structural dynamics. Powerful experimental techniques such as single molecule Förster …
structural dynamics. Powerful experimental techniques such as single molecule Förster …
Rapid interpretation of small-angle X-ray scattering data
The fundamental aim of structural analyses in biophysics is to reveal a mutual relation
between a molecule's dynamic structure and its physiological function. Small-angle X-ray …
between a molecule's dynamic structure and its physiological function. Small-angle X-ray …
Simulating protein fold switching by replica exchange with tunneling
NA Bernhardt, W Xi, W Wang… - Journal of chemical …, 2016 - ACS Publications
Recent experiments suggest that an amino acid sequence encodes not only the native fold
of a protein but also other forms that are essential for its function or are important during …
of a protein but also other forms that are essential for its function or are important during …
Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies
DNA-binding response regulators (DBRRs) are a broad class of proteins that operate in
tandem with their partner kinase proteins to form two-component signal transduction …
tandem with their partner kinase proteins to form two-component signal transduction …
Formation of a secretion-competent protein complex by a dynamic wrap-around binding mechanism
AA Gupta, I Reinartz, G Karunanithy, A Spilotros… - Journal of molecular …, 2018 - Elsevier
Bacterial virulence is typically initiated by translocation of effector or toxic proteins across
host cell membranes. A class of gram-negative pathogenic bacteria including Yersinia …
host cell membranes. A class of gram-negative pathogenic bacteria including Yersinia …
Revealing the global map of protein folding space by large-scale simulations
The full characterization of protein folding is a remarkable long-standing challenge both for
experiment and simulation. Working towards a complete understanding of this process, one …
experiment and simulation. Working towards a complete understanding of this process, one …
FRET dyes significantly affect SAXS intensities of proteins
Structural analyses in biophysics aim at revealing a relationship between a molecule's
dynamic structure and its physiological function. Förster resonance energy transfer (FRET) …
dynamic structure and its physiological function. Förster resonance energy transfer (FRET) …
Native structure-based modeling and simulation of biomolecular systems per mouse click
Background Molecular dynamics (MD) simulations provide valuable insight into
biomolecular systems at the atomic level. Notwithstanding the ever-increasing power of high …
biomolecular systems at the atomic level. Notwithstanding the ever-increasing power of high …
Potential Self-Peptide Inhibitors of the SARS-CoV-2 Main Protease
A Banerjee, S Gosavi - The Journal of Physical Chemistry B, 2023 - ACS Publications
The SARS-CoV-2 main protease (Mpro) plays an essential role in viral replication, cleaving
viral polyproteins into functional proteins. This makes Mpro an important drug target. Mpro …
viral polyproteins into functional proteins. This makes Mpro an important drug target. Mpro …
Characterising the combined eects of cytochrome P450 missense variants within the star allele nomenclature
N Khoza - wiredspace.wits.ac.za
Genetic variations in Cytochrome P450 (CYP) enzymes shape drug responses. However,
many CYP haplotypes (star alleles) lack functional annotations, posing a barrier to under …
many CYP haplotypes (star alleles) lack functional annotations, posing a barrier to under …