Gray whale transcriptome reveals longevity adaptations associated with DNA repair and ubiquitination

D Toren, A Kulaga, M Jethva, E Rubin… - Aging …, 2020 - Wiley Online Library
One important question in aging research is how differences in genomics and
transcriptomics determine the maximum lifespan in various species. Despite recent …

LoCoHD: a metric for comparing local environments of proteins

Z Fazekas, D K. Menyhárd, A Perczel - Nature Communications, 2024 - nature.com
Protein folds and the local environments they create can be compared using a variety of
differently designed measures, such as the root mean squared deviation, the global distance …

Fractal and mathematical morphology in intricate comparison between tertiary protein structures

RK Rout, P Pal Choudhury, SP Maity… - Computer Methods in …, 2018 - Taylor & Francis
Intricate comparison between two given tertiary structures of proteins is as important as the
comparison of their functions. In literature, several algorithms have been devised to compute …

Towards efficient indexing of arbitrary similarity: Vision paper

T Bartoš, T Skopal, J Moško - ACM SIGMOD Record, 2013 - dl.acm.org
The popularity of similarity search expanded with the increased interest in multimedia
databases, bioinformatics, or social networks, and with the growing number of users trying to …

Efficient indexing of similarity models with inequality symbolic regression

T Bartoš, T Skopal, J Moško - Proceedings of the 15th annual conference …, 2013 - dl.acm.org
The increasing amount of available unstructured content introduced a new concept of
searching for information-the content-based retrieval. The principle behind is that the objects …

Algorithmic exploration of axiom spaces for efficient similarity search at large scale

T Skopal, T Bartoš - International Conference on Similarity Search and …, 2012 - Springer
Similarity search is becoming popular in even more disciplines, such as multimedia
databases, bioinformatics, social networks, to name a few. The existing indexing techniques …

Gray whale transcriptome reveals longevity adaptations associated with DNA repair, autophagy and ubiquitination

D Toren, A Kulaga, M Jethva, E Rubin, AV Snezhkina… - bioRxiv, 2019 - biorxiv.org
One important question in aging research is how differences in genomics and
transcriptomics determine maximum lifespan in various species. Despite recent progress …

Geodesic Distance in Comparison Between Tertiary Protein Structures

S Pati, S KumarPahuja - … on Cloud Computing, Data Science & …, 2018 - ieeexplore.ieee.org
The comparison between the two given tertiary protein structures is as imperative as that of
the comparison of their functions. In literature, assorted algorithms are elaborated to …

On the parallelization of the sprot measure and the tm-score algorithm

J Galgonek, M Kruliš, D Hoksza - … , Rhodes Islands, Greece, August 27-31 …, 2013 - Springer
Similarity measures for the protein structures are quite complex and require significant
computational time. We propose a parallel approach to this problem to fully exploit the …

A novel handwritten signature verification method with surface desorption atmospheric pressure chemical ionization mass spectrometry imaging

W Zhang, Y Liu, H Chen, B Jia… - 2012 5th International …, 2012 - ieeexplore.ieee.org
In this paper, a novel method for off-line handwritten signature verification is presented. The
method relies on ink concentration of a handwritten signature. The ink concentration is …