Fluorescent polymer nanoparticles based on dyes: seeking brighter tools for bioimaging

A Reisch, AS Klymchenko - Small, 2016 - Wiley Online Library
Speed, resolution and sensitivity of today's fluorescence bioimaging can be drastically
improved by fluorescent nanoparticles (NPs) that are many‐fold brighter than organic dyes …

Advances in single-molecule fluorescence methods for molecular biology

C Joo, H Balci, Y Ishitsuka, C Buranachai… - Annu. Rev …, 2008 - annualreviews.org
Ever since their introduction two decades ago, single-molecule (SM) fluorescence methods
have matured and branched out to address numerous biological questions, which were …

[HTML][HTML] Fundamental behaviors emerge from simulations of a living minimal cell

ZR Thornburg, DM Bianchi, TA Brier, BR Gilbert… - Cell, 2022 - cell.com
We present a whole-cell fully dynamical kinetic model (WCM) of JCVI-syn3A, a minimal cell
with a reduced genome of 493 genes that has retained few regulatory proteins or small …

Escherichia coli “Marionette” strains with 12 highly optimized small-molecule sensors

AJ Meyer, TH Segall-Shapiro, E Glassey… - Nature chemical …, 2019 - nature.com
Cellular processes are carried out by many genes, and their study and optimization requires
multiple levers by which they can be independently controlled. The most common method is …

RNA mango aptamer-fluorophore: a bright, high-affinity complex for RNA labeling and tracking

EV Dolgosheina, SCY Jeng… - ACS chemical …, 2014 - ACS Publications
Because RNA lacks strong intrinsic fluorescence, it has proven challenging to track RNA
molecules in real time. To address this problem and to allow the purification of fluorescently …

Organization of intracellular reactions with rationally designed RNA assemblies

CJ Delebecque, AB Lindner, PA Silver, FA Aldaye - Science, 2011 - science.org
The rules of nucleic acid base-pairing have been used to construct nanoscale architectures
and organize biomolecules, but little has been done to apply this technology in vivo. We …

Real-time kinetics of gene activity in individual bacteria

I Golding, J Paulsson, SM Zawilski, EC Cox - Cell, 2005 - cell.com
Protein levels have been shown to vary substantially between individual cells in clonal
populations. In prokaryotes, the contribution to such fluctuations from the inherent …

Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells

S Bakshi, A Siryaporn, M Goulian… - Molecular …, 2012 - Wiley Online Library
Quantitative spatial distributions of ribosomes (S2‐YFP) and RNA polymerase (RNAP; β′‐
yGFP) in live Escherichia coli are measured by superresolution fluorescence microscopy. In …

Physical nature of bacterial cytoplasm

I Golding, EC Cox - Physical review letters, 2006 - APS
We track the motion of individual fluorescently labeled mRNA molecules inside live E. coli
cells. We find that the motion is subdiffusive, with an exponent that is robust to physiological …

Multicolor conjugated polymer dots for biological fluorescence imaging

C Wu, B Bull, C Szymanski, K Christensen, J McNeill - ACS nano, 2008 - ACS Publications
Highly fluorescent conjugated polymer dots were developed for demanding applications
such as fluorescence imaging in live cells. These nanoparticles exhibit small particle …