Nuclear mRNPs are compact particles packaged with a network of proteins promoting RNA–RNA interactions

F Bonneau, J Basquin, B Steigenberger… - Genes & …, 2023 - genesdev.cshlp.org
Messenger RNAs (mRNAs) are at the center of the central dogma of molecular biology. In
eukaryotic cells, these long ribonucleic acid polymers do not exist as naked transcripts; …

Advances in Mass Spectrometry‐Based Structural Proteomics: Development of HDX‐MS and XL‐MS Techniques from Recombinant Protein to Cellular Systems

VV Courouble, MD Mann… - Israel Journal of Chemistry, 2023 - Wiley Online Library
Mass spectrometry (MS) is a central analytical technique used to study proteins and
biomolecules. It measures mass‐to‐charge ratio of ions to identify and quantify molecules in …

Domains and residues of the Saccharomyces cerevisiae hnRNP protein Hrp1 important for transcriptional autoregulation and noncoding RNA termination

EC Goguen, DA Brow - Genetics, 2023 - academic.oup.com
Proteins that bind the nascent transcript exiting RNA polymerase II can regulate transcription
elongation. The essential Saccharomyces cerevisiae hnRNP protein Hrp1 is one such …

RNAincoder: a deep learning-based encoder for RNA and RNA-associated interaction

Y Wang, Z Chen, Z Pan, S Huang, J Liu… - Nucleic acids …, 2023 - academic.oup.com
Ribonucleic acids (RNAs) involve in various physiological/pathological processes by
interacting with proteins, compounds, and other RNAs. A variety of powerful computational …

Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid-protein interaction sites by mass spectrometry

LM Welp, T Sachsenberg, A Wulf, A Chernev… - bioRxiv, 2024 - biorxiv.org
UV (ultra-violet) crosslinking with mass spectrometry (XL-MS) has been established for
identifying RNA-and DNA-binding proteins along with their domains and amino acids …

RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing

A Moursy, A Cléry, S Gerhardy, KM Betz, S Rao… - Nature …, 2023 - nature.com
The conserved SR-like protein Npl3 promotes splicing of diverse pre-mRNAs. However, the
RNA sequence (s) recognized by the RNA Recognition Motifs (RRM1 & RRM2) of Npl3 …

Yeast Npl3 regulates replicative senescence outside of TERRA R-loop resolution and co-transcriptional processing

JJ Wanat, JJ McCann, M Tingey, J Atkins… - … Nucleotides & Nucleic …, 2024 - Taylor & Francis
Eukaryotic cells without telomerase experience progressively shorter telomeres with each
round of cell division until cell cycle arrest is initiated, leading to replicative senescence …

Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation

A Niedner-Boblenz, T Monecke, J Hennig… - bioRxiv, 2024 - biorxiv.org
RNA-binding proteins are essential for gene regulation and the spatial organization of cells.
Here, we report that the yeast ribosome biogenesis factor Loc1p is an intrinsically …

Structural analysis of multi-domain RNA binding proteins in 3'splice site recognition and mRNA-protein assembly

N Kachariya - 2023 - mediatum.ub.tum.de
Multidomain RNA binding proteins (RBPs) play a crucial role in pre-messenger RNA
splicing, nuclear mRNA assembly and export, by recognizing cis-regulatory RNA sequence …

[引用][C] DISSECTING A ROLE FOR ARGININE METHYLATION IN YEAST RNA-BINDING PROTEINS NPL3 AND MUD2

S Ishrat - 2024 - Faculty of the Graduate School of …