[HTML][HTML] Ecology, evolution and spillover of coronaviruses from bats
In the past two decades, three coronaviruses with ancestral origins in bats have emerged
and caused widespread outbreaks in humans, including severe acute respiratory syndrome …
and caused widespread outbreaks in humans, including severe acute respiratory syndrome …
[HTML][HTML] On the origin and evolution of SARS-CoV-2
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is responsible for the
ongoing global outbreak of a coronavirus disease (herein referred to as COVID-19). Other …
ongoing global outbreak of a coronavirus disease (herein referred to as COVID-19). Other …
[HTML][HTML] The natural history, pathobiology, and clinical manifestations of SARS-CoV-2 infections
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the etiological agent of
coronavirus disease 2019 (COVID-19). SARS-CoV-2, is a positive-sense single-stranded …
coronavirus disease 2019 (COVID-19). SARS-CoV-2, is a positive-sense single-stranded …
[HTML][HTML] Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study
The 2019 novel coronavirus (renamed SARS-CoV-2, and generally referred to as the COVID-
19 virus) has spread to 184 countries with over 1.5 million confirmed cases. Such major viral …
19 virus) has spread to 184 countries with over 1.5 million confirmed cases. Such major viral …
Molecular evolution of human coronavirus genomes
Human coronaviruses (HCoVs), including SARS-CoV and MERS-CoV, are zoonotic
pathogens that originated in wild animals. HCoVs have large genomes that encode a fixed …
pathogens that originated in wild animals. HCoVs have large genomes that encode a fixed …
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
J Rodriguez-Rivas, G Croce… - Proceedings of the …, 2022 - National Acad Sciences
The emergence of new variants of severe acute respiratory syndrome coronavirus 2 (SARS-
CoV-2) is a major concern given their potential impact on the transmissibility and …
CoV-2) is a major concern given their potential impact on the transmissibility and …
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
Over the past two decades, comparative sequence analysis using codon-substitution
models has been honed into a powerful and popular approach for detecting signatures of …
models has been honed into a powerful and popular approach for detecting signatures of …
[HTML][HTML] A decade after SARS: strategies for controlling emerging coronaviruses
RL Graham, EF Donaldson, RS Baric - Nature Reviews Microbiology, 2013 - nature.com
Two novel coronaviruses have emerged in humans in the twenty-first century: severe acute
respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome …
respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome …
Chikungunya: Evolutionary history and recent epidemic spread
SC Weaver, NL Forrester - Antiviral research, 2015 - Elsevier
Chikungunya virus (CHIKV) has a long history of emergence into urban transmission cycles
from its ancestral, enzootic, sylvatic foci in Sub-Saharan Africa, most recently spreading to …
from its ancestral, enzootic, sylvatic foci in Sub-Saharan Africa, most recently spreading to …
The ocular surface, coronaviruses and COVID‐19
MDP Willcox, K Walsh, JJ Nichols… - Clinical and …, 2020 - Taylor & Francis
The ocular surface has been suggested as a site of infection with Coronavirus‐2 (SARS‐
CoV‐2) responsible for the coronavirus disease‐19 (COVID‐19). This review examines the …
CoV‐2) responsible for the coronavirus disease‐19 (COVID‐19). This review examines the …