Evolution of diverse strategies for promoter regulation
DNA is fundamentally important for all cellular organisms due to its role as a store of
hereditary genetic information. The precise and accurate regulation of gene transcription …
hereditary genetic information. The precise and accurate regulation of gene transcription …
RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum
Fusobacterium nucleatum, long known as a constituent of the oral microflora, has recently
garnered renewed attention for its association with several different human cancers. The …
garnered renewed attention for its association with several different human cancers. The …
Deep Profiling of the Proteome Dynamics of Pseudomonas aeruginosa Reference Strain PAO1 under Different Growth Conditions
As one of the most common bacterial pathogens causing nosocomial infections,
Pseudomonas aeruginosa is highly adaptable to survive under various conditions. Here, we …
Pseudomonas aeruginosa is highly adaptable to survive under various conditions. Here, we …
Functional expansion of a TCA cycle operon mRNA by a 3′ end-derived small RNA
M Miyakoshi, G Matera, K Maki, Y Sone… - Nucleic Acids …, 2019 - academic.oup.com
Global RNA profiling studies in bacteria have predicted the existence of many of small
noncoding RNAs (sRNAs) that are processed off mRNA 3′ ends to regulate other mRNAs …
noncoding RNAs (sRNAs) that are processed off mRNA 3′ ends to regulate other mRNAs …
Compendium-wide analysis of Pseudomonas aeruginosa core and accessory genes reveals transcriptional patterns across strains PAO1 and PA14
Pseudomonas aeruginosa is an opportunistic pathogen that causes difficult-to-treat
infections. Two well-studied divergent P. aeruginosa strain types, PAO1 and PA14, have …
infections. Two well-studied divergent P. aeruginosa strain types, PAO1 and PA14, have …
[HTML][HTML] Carbohydrate-controlled serine protease inhibitor (serpin) production in Bifidobacterium longum subsp. longum
S Duboux, M Golliard, JA Muller, G Bergonzelli… - Scientific reports, 2021 - nature.com
Abstract The Serine Protease Inhibitor (serpin) protein has been suggested to play a key
role in the interaction of bifidobacteria with the host. By inhibiting intestinal serine proteases …
role in the interaction of bifidobacteria with the host. By inhibiting intestinal serine proteases …
The functional determinants in the organization of bacterial genomes
Bacterial genomes are now recognized as interacting intimately with cellular processes.
Uncovering organizational mechanisms of bacterial genomes has been a primary focus of …
Uncovering organizational mechanisms of bacterial genomes has been a primary focus of …
SLING: a tool to search for linked genes in bacterial datasets
Gene arrays and operons that encode functionally linked proteins form the most basic unit of
transcriptional regulation in bacteria. Rules that govern the order and orientation of genes in …
transcriptional regulation in bacteria. Rules that govern the order and orientation of genes in …
[HTML][HTML] OperonSEQer: A set of machine-learning algorithms with threshold voting for detection of operon pairs using short-read RNA-sequencing data
R Krishnakumar, AM Ruffing - PLoS computational biology, 2022 - journals.plos.org
Operon prediction in prokaryotes is critical not only for understanding the regulation of
endogenous gene expression, but also for exogenous targeting of genes using newly …
endogenous gene expression, but also for exogenous targeting of genes using newly …
Systematic analysis of the underlying genomic architecture for transcriptional–translational coupling in prokaryotes
R Bharti, D Siebert, B Blombach… - NAR Genomics and …, 2022 - academic.oup.com
Transcriptional-translational coupling is accepted to be a fundamental mechanism of gene
expression in prokaryotes and therefore has been analyzed in detail. However, the …
expression in prokaryotes and therefore has been analyzed in detail. However, the …