The emerging landscape of spatial profiling technologies

JR Moffitt, E Lundberg, H Heyn - Nature Reviews Genetics, 2022 - nature.com
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …

Spatial profiling technologies illuminate the tumor microenvironment

O Elhanani, R Ben-Uri, L Keren - Cancer cell, 2023 - cell.com
The tumor microenvironment (TME) is composed of many different cellular and acellular
components that together drive tumor growth, invasion, metastasis, and response to …

[HTML][HTML] A transcriptomic axis predicts state modulation of cortical interneurons

S Bugeon, J Duffield, M Dipoppa, A Ritoux, I Prankerd… - Nature, 2022 - nature.com
Transcriptomics has revealed that cortical inhibitory neurons exhibit a great diversity of fine
molecular subtypes,,,,–, but it is not known whether these subtypes have correspondingly …

[HTML][HTML] Spatial proteomics in three-dimensional intact specimens

HS Bhatia, AD Brunner, F Öztürk, S Kapoor, Z Rong… - Cell, 2022 - cell.com
Spatial molecular profiling of complex tissues is essential to investigate cellular function in
physiological and pathological states. However, methods for molecular analysis of large …

Spatiotemporal omics for biology and medicine

L Liu, A Chen, Y Li, J Mulder, H Heyn, X Xu - Cell, 2024 - cell.com
The completion of the Human Genome Project has provided a foundational blueprint for
understanding human life. Nonetheless, understanding the intricate mechanisms through …

Synapse-enriched m6A-modified Malat1 interacts with the novel m6A reader, DPYSL2, and is required for fear-extinction memory

SU Madugalle, WS Liau, Q Zhao, X Li… - Journal of …, 2023 - Soc Neuroscience
The RNA modification N6-methyladenosine (m6A) regulates the interaction between RNA
and various RNA binding proteins within the nucleus and other subcellular compartments …

Applications of single-cell technologies in drug discovery for tumor treatment

B Liu, S Hu, X Wang - Iscience, 2024 - cell.com
Single-cell technologies have been known as advanced and powerful tools to study tumor
biological systems at the single-cell resolution and are playing increasingly critical roles in …

Studying the Role of Astrocytes at Synapses Using Single-Cell Transcriptomics

F Pestana, TG Belgard, T Voet, MG Holt - New Technologies for Glutamate …, 2024 - Springer
The central nervous system (CNS) contains a diverse number of neuronal and non-neuronal
cell types that physically interact with one another. It is these physical interactions which …

Imaging and Molecular Annotation of Xenographs and Tumours (IMAXT): High throughput data and analysis infrastructure

EA González-Solares, A Dariush… - Biological …, 2023 - cambridge.org
With the aim of producing a 3D representation of tumors, imaging and molecular annotation
of xenografts and tumors (IMAXT) uses a large variety of modalities in order to acquire tumor …

Research briefing

Techniques for single-cell and spatial expression profiling hold great promise for defining
the complexity of metastatic microenvironments, but different methods give different …