X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in …
CD Putnam, M Hammel, GL Hura… - Quarterly reviews of …, 2007 - cambridge.org
Crystallography supplies unparalleled detail on structural information critical for mechanistic
analyses; however, it is restricted to describing low energy conformations of …
analyses; however, it is restricted to describing low energy conformations of …
From words to literature in structural proteomics
Technical advances on several frontiers have expanded the applicability of existing methods
in structural biology and helped close the resolution gaps between them. As a result, we are …
in structural biology and helped close the resolution gaps between them. As a result, we are …
[HTML][HTML] Namdinator–automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps
Model building into experimental maps is a key element of structural biology, but can be
both time consuming and error prone for low-resolution maps. Here we present Namdinator …
both time consuming and error prone for low-resolution maps. Here we present Namdinator …
Structures of Cas9 endonucleases reveal RNA-mediated conformational activation
Introduction Bacteria and archaea defend themselves against invasive DNA using adaptive
immune systems comprising CRISPR (clustered regularly interspaced short palindromic …
immune systems comprising CRISPR (clustered regularly interspaced short palindromic …
[图书][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state
J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …
biophysics and structural biology at present, and Frank is arguably the most distinguished …
Transferrin receptor 1 is a reticulocyte-specific receptor for Plasmodium vivax
J Gruszczyk, U Kanjee, LJ Chan, S Menant, B Malleret… - Science, 2018 - science.org
Plasmodium vivax shows a strict host tropism for reticulocytes. We identified transferrin
receptor 1 (TfR1) as the receptor for P. vivax reticulocyte-binding protein 2b (PvRBP2b). We …
receptor 1 (TfR1) as the receptor for P. vivax reticulocyte-binding protein 2b (PvRBP2b). We …
Visualizing density maps with UCSF Chimera
TD Goddard, CC Huang, TE Ferrin - Journal of structural biology, 2007 - Elsevier
We describe methods for interactive visualization and analysis of density maps available in
the UCSF Chimera molecular modeling package. The methods enable segmentation, fitting …
the UCSF Chimera molecular modeling package. The methods enable segmentation, fitting …
The structural basis of flagellin detection by NAIP5: A strategy to limit pathogen immune evasion
Robust innate immune detection of rapidly evolving pathogens is critical for host defense.
Nucleotide-binding domain leucine-rich repeat (NLR) proteins function as cytosolic innate …
Nucleotide-binding domain leucine-rich repeat (NLR) proteins function as cytosolic innate …
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
Cryo-electron microscopy produces 3D density maps of molecular machines, which consist
of various molecular components such as proteins and RNA. Segmentation of individual …
of various molecular components such as proteins and RNA. Segmentation of individual …
[HTML][HTML] Structure and topography of the synaptic V-ATPase–synaptophysin complex
Synaptic vesicles are organelles with a precisely defined protein and lipid composition,, yet
the molecular mechanisms for the biogenesis of synaptic vesicles are mainly unknown. Here …
the molecular mechanisms for the biogenesis of synaptic vesicles are mainly unknown. Here …