Instance segmentation of neuronal nuclei leveraging domain adaptation

K Brady, P Khorrami, L Gjesteby… - 2021 IEEE High …, 2021 - ieeexplore.ieee.org
The detection and localization of individual cell nuclei in dense neural scenes collected by
microscopy traditionally depends on human-expert-intensive manual markup for training …

Active learning pipeline for brain mapping in a high performance computing environment

A Michaleas, LA Gjesteby, M Snyder… - 2020 IEEE High …, 2020 - ieeexplore.ieee.org
This paper describes a scalable active learning pipeline prototype for large-scale brain
mapping that leverages high performance computing power. It enables high-throughput …

Annotation-Efficient 3d U-Nets For Brain Plasticity Network Mapping

LA Gjesteby, T Klinghoffer, M Ash… - 2021 IEEE 18th …, 2021 - ieeexplore.ieee.org
A fundamental challenge in machine learning-based segmentation of large-scale brain
microscopy images is the time and domain expertise required by humans to generate …