Recombination in viruses: mechanisms, methods of study, and evolutionary consequences

M Pérez-Losada, M Arenas, JC Galán, F Palero… - Infection, Genetics and …, 2015 - Elsevier
Recombination is a pervasive process generating diversity in most viruses. It joins variants
that arise independently within the same molecule, creating new opportunities for viruses to …

Diversity considerations in HIV-1 vaccine selection

B Gaschen, J Taylor, K Yusim, B Foley, F Gao, D Lang… - Science, 2002 - science.org
Globally, human immunodeficiency virus–type 1 (HIV-1) is extraordinarily variable, and this
diversity poses a major obstacle to AIDS vaccine development. Currently, candidate …

Human Immunodeficiency Virus Type 1 env Clones from Acute and Early Subtype B Infections for Standardized Assessments of Vaccine-Elicited Neutralizing …

M Li, F Gao, JR Mascola, L Stamatatos… - Journal of …, 2005 - Am Soc Microbiol
Induction of broadly cross-reactive neutralizing antibodies is a high priority for AIDS vaccine
development but one that has proven difficult to be achieved. While most immunogens …

HIV evolution: CTL escape mutation and reversion after transmission

AJ Leslie, KJ Pfafferott, P Chetty, R Draenert… - Nature medicine, 2004 - nature.com
Within-patient HIV evolution reflects the strong selection pressure driving viral escape from
cytotoxic T-lymphocyte (CTL) recognition. Whether this intrapatient accumulation of escape …

HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy

S Hué, JP Clewley, PA Cane, D Pillay - Aids, 2004 - journals.lww.com
Objectives: We wished to assess the potential of using HIV-1 pol gene for the identification of
transmissions events by phylogenetic means in the era of antiretroviral drug selective …

Antigenicity and immunogenicity of a synthetic human immunodeficiency virus type 1 group m consensus envelope glycoprotein

F Gao, EA Weaver, Z Lu, Y Li, HX Liao, B Ma… - Journal of …, 2005 - Am Soc Microbiol
Genetic variation of human immunodeficiency virus (HIV-1) represents a major obstacle for
AIDS vaccine development. To decrease the genetic distances between candidate …

Hierarchical Targeting of Subtype C Human Immunodeficiency Virus Type 1 Proteins by CD8+ T Cells: Correlation with Viral Load

A Masemola, T Mashishi, G Khoury, P Mohube… - Journal of …, 2004 - Am Soc Microbiol
An understanding of the relationship between the breadth and magnitude of T-cell epitope
responses and viral loads is important for the design of effective vaccines. For this study, we …

Tat protein of human immunodeficiency virus type 1 subtype C strains is a defective chemokine

U Ranga, R Shankarappa, NB Siddappa… - Journal of …, 2004 - Am Soc Microbiol
Human immunodeficiency virus type 1 (HIV-1)-associated dementia (HAD) is correlated with
increased monocyte migration to the brain, and the incidence of HAD among otherwise …

Consensus and ancestral state HIV vaccines

DC Nickle, MA Jensen, GS Gottlieb, D Shriner… - Science, 2003 - science.org
The review by B. Gaschen et al.(” Diversity considerations in HIV-1 vaccine selection,” 28
June, p. 2354) describes two computational methods (consensus and ancestral state) being …

HIV genetic diversity: biological and public health consequences

IF Butler, I Pandrea, PA Marx, C Apetrei - Current HIV research, 2007 - ingentaconnect.com
The devastating consequences of AIDS pandemic will probably only be controlled when a
vaccine is developed that is safe, effective, affordable, and simple enough to permit …