NetSolP: predicting protein solubility in Escherichia coli using language models
Motivation Solubility and expression levels of proteins can be a limiting factor for large-scale
studies and industrial production. By determining the solubility and expression directly from …
studies and industrial production. By determining the solubility and expression directly from …
PPalign: optimal alignment of Potts models representing proteins with direct coupling information
H Talibart, F Coste - BMC bioinformatics, 2021 - Springer
Background To assign structural and functional annotations to the ever increasing amount of
sequenced proteins, the main approach relies on sequence-based homology search …
sequenced proteins, the main approach relies on sequence-based homology search …
[PDF][PDF] Using residues coevolution to search for protein homologs through alignment of Potts models
H Talibart, F Coste - JOBIM 2019-Journées Ouvertes Biologie …, 2019 - inria.hal.science
Thanks to sequencing technologies, the number of available protein sequences has
considerably increased in the past years, but their functional and structural annotation …
considerably increased in the past years, but their functional and structural annotation …
ComPotts: Optimal alignment of coevolutionary models for protein sequences
H Talibart, F Coste - bioRxiv, 2020 - biorxiv.org
To assign structural and functional annotations to the ever increasing amount of sequenced
proteins, the main approach relies on sequence-based homology search methods, eg …
proteins, the main approach relies on sequence-based homology search methods, eg …
In vitro Study of Antiatherogenic Effect of Punicalagin on the Regulation of Gene Expression in Macrophage Cells
SJ Almowallad - 2021 - platform.almanhal.com
Background: Cardiovascular diseases (CVD) are the leading cause of death worldwide, and
atherosclerosis can lead to most CVD. Nutraceuticals that prevent cholesterol deposition …
atherosclerosis can lead to most CVD. Nutraceuticals that prevent cholesterol deposition …
Network-Based Prediction of Novel CRISPR-Associated Genes in Metagenomes
JL Weissman, PLF Johnson - Msystems, 2020 - Am Soc Microbiol
ABSTRACT A diversity of clustered regularly interspaced short palindromic repeat (CRISPR)-
Cas systems provide adaptive immunity to bacteria and archaea through recording …
Cas systems provide adaptive immunity to bacteria and archaea through recording …
[PDF][PDF] Algorithms and models for protein structure analysis
A Irena - 2019 - core.ac.uk
In this work we present several algorithmic approaches designed to help researchers in the
study of various orders of protein structure. To facilitate the study of molecular sequence …
study of various orders of protein structure. To facilitate the study of molecular sequence …