Dissecting the stochastic transcription initiation process in live Escherichia coli

J Lloyd-Price, S Startceva, V Kandavalli… - DNA …, 2016 - academic.oup.com
We investigate the hypothesis that, in Escherichia coli, while the concentration of RNA
polymerases differs in different growth conditions, the fraction of RNA polymerases free for …

Analytical kinetic model of native tandem promoters in E. coli

V Chauhan, MNM Bahrudeen, CSD Palma… - PLoS Computational …, 2022 - journals.plos.org
Closely spaced promoters in tandem formation are abundant in bacteria. We investigated
the evolutionary conservation, biological functions, and the RNA and single-cell protein …

Kinetics of gene expression in bacteria—From models to measurements, and back again

AS Ribeiro - Canadian Journal of Chemistry, 2013 - cdnsciencepub.com
Dennis Salahub has contributed to several scientific areas. Likely, one of the lesser known
contributions is the one on the study of the kinetics of gene expression in prokaryotes, which …

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

A Häkkinen, SMD Oliveira… - Journal of the …, 2019 - royalsocietypublishing.org
Many genes are spaced closely, allowing coordination without explicit control through
shared regulatory elements and molecular interactions. We study the dynamics of a …

[PDF][PDF] Image Processing and Simulation Toolboxes of Microscopy Images of Bacterial Cells

F Associado com Agregação - 2020 - core.ac.uk
Recent advances in microscopy imaging technology have allowed the characterization of
the dynamics of cellular processes at the single-cell and single-molecule level. Particularly …

[引用][C] Delays as regulators of the dynamics of genetic circuits

AS Ribeiro - Markov Process. Relat. Fields, 2016