Detecting RNA–RNA interactome

S Singh, S Shyamal, AC Panda - Wiley Interdisciplinary …, 2022 - Wiley Online Library
The last decade has seen a robust increase in various types of novel RNA molecules and
their complexity in gene regulation. RNA molecules play a critical role in cellular events by …

Definition and identification of small RNA sponges: Focus on miRNA sequestration

M Migault, E Donnou-Fournet, MD Galibert, D Gilot - Methods, 2017 - Elsevier
Targeting RNAs appears as an important opportunity to modulate biological processes.
Here, we overviewed critical parameters implied in RNAs competition to bind small RNAs …

Simple alkanoyl acylating agents for reversible RNA functionalization and control

HS Park, AM Kietrys, ET Kool - Chemical Communications, 2019 - pubs.rsc.org
We describe the synthesis and RNA acylation activity of a series of minimalist azidoalkanoyl
imidazole reagents, with the aim of functionalizing RNA at 2′-hydroxyl groups at …

Insights into transcription termination of Hfq-binding sRNAs of Escherichia coli and characterization of readthrough products

T Morita, M Ueda, K Kubo, H Aiba - Rna, 2015 - rnajournal.cshlp.org
The genes encoding Hfq-dependent sRNAs possess a typical Rho-independent
transcription terminator. Here, we have studied the molecular events occurring at Rho …

RNA ligation for mono and dually labeled RNAs

A Depaix, A Mlynarska‐Cieslak… - … A European Journal, 2021 - Wiley Online Library
Labeled RNAs are invaluable probes for investigation of RNA function and localization.
However, mRNA labeling remains challenging. Here, we developed an improved method for …

Reprogramming gene expression by targeting RNA-based interactions: A novel pipeline utilizing RNA array technology

CA Henderson, HA Vincent… - ACS Synthetic Biology, 2021 - ACS Publications
Regulatory RNA-based interactions are critical for coordinating gene expression and are
increasingly being targeted in synthetic biology, antimicrobial, and therapeutic fields …

High-density functional-RNA arrays as a versatile platform for studying RNA-based interactions

JO Phillips, LE Butt, CA Henderson… - Nucleic Acids …, 2018 - academic.oup.com
We are just beginning to unravel the myriad of interactions in which non-coding RNAs
participate. The intricate RNA interactome is the foundation of many biological processes …

Divergently Transcribed ncRNAs in Escherichia coli: Refinement of the Transcription Starts Assumes Functional Diversification

S Kiselev, N Markelova, I Masulis - Frontiers in Molecular Biosciences, 2021 - frontiersin.org
Non-coding regulatory RNAs (ncRNAs) comprise specialized group of essential genetically
encoded biological molecules involved in the wide variety of cellular metabolic processes …

Charakterizace enzymů modifikujících RNA

D Michalík - 2019 - is.muni.cz
Anotace Tato práce se zabývá interakcí thymidylát syntázy (TYMS) se svým vlastním
transkriptem. Za tímto účelem byl vytvořen nový přístup pro charakterizaci interakce RNA …

[PDF][PDF] modifikujících RNA

D Michalík - is.muni.cz
In this thesis, different methods were used to analyse thymidylate synthase binding to its
transcript. To this end, a novel approach is described that characterises the RNA-protein …