Bias in RNA‐seq library preparation: current challenges and solutions
H Shi, Y Zhou, E Jia, M Pan, Y Bai… - BioMed research …, 2021 - Wiley Online Library
Although RNA sequencing (RNA‐seq) has become the most advanced technology for
transcriptome analysis, it also confronts various challenges. As we all know, the workflow of …
transcriptome analysis, it also confronts various challenges. As we all know, the workflow of …
The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity
Plants tailor their metabolism to environmental conditions, in part through the recognition of
a wide array of self and non-self molecules. In particular, the perception of microbial or plant …
a wide array of self and non-self molecules. In particular, the perception of microbial or plant …
Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea
Sclerotinia sclerotiorum, the causal agent of white stem rot, is responsible for significant
losses in crop yields around the globe. While our understanding of S. sclerotiorum infection …
losses in crop yields around the globe. While our understanding of S. sclerotiorum infection …
Current and future methods for mRNA analysis: a drive toward single molecule sequencing
A Bayega, S Fahiminiya, S Oikonomopoulos… - … Analysis: Methods and …, 2018 - Springer
The transcriptome encompasses a range of species including messenger RNA, and other
noncoding RNA such as rRNA, tRNA, and short and long noncoding RNAs. Due to the huge …
noncoding RNA such as rRNA, tRNA, and short and long noncoding RNAs. Due to the huge …
Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae
Transcriptional dynamic in response to environmental and developmental cues are
fundamental to biology, yet many mechanistic aspects are poorly understood. One such …
fundamental to biology, yet many mechanistic aspects are poorly understood. One such …
A modern ampelography: a genetic basis for leaf shape and venation patterning in grape
Terroir, the unique interaction between genotype, environment, and culture, is highly refined
in domesticated grape (Vitis vinifera). Toward cultivating terroir, the science of …
in domesticated grape (Vitis vinifera). Toward cultivating terroir, the science of …
A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines
Introgression lines (ILs), in which genetic material from wild tomato species is introgressed
into a domesticated background, have been used extensively in tomato (Solanum …
into a domesticated background, have been used extensively in tomato (Solanum …
Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape
Y Ichihashi, JA Aguilar-Martínez… - Proceedings of the …, 2014 - National Acad Sciences
Despite a long-standing interest in the genetic basis of morphological diversity, the
molecular mechanisms that give rise to developmental variation are incompletely …
molecular mechanisms that give rise to developmental variation are incompletely …
Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress
TA Lee, J Bailey-Serres - The Plant Cell, 2019 - academic.oup.com
Gene regulation is a dynamic process involving changes ranging from the remodeling of
chromatin to preferential translation. To understand integrated nuclear and cytoplasmic …
chromatin to preferential translation. To understand integrated nuclear and cytoplasmic …
De novo assembly and characterization of the transcriptome of the parasitic weed dodder identifies genes associated with plant parasitism
Parasitic flowering plants are one of the most destructive agricultural pests and have major
impact on crop yields throughout the world. Being dependent on finding a host plant for …
impact on crop yields throughout the world. Being dependent on finding a host plant for …