Dragging ras back in the ring

AG Stephen, D Esposito, RK Bagni, F McCormick - Cancer cell, 2014 - cell.com
Ras proteins play a major role in human cancers but have not yielded to therapeutic attack.
Ras-driven cancers are among the most difficult to treat and often excluded from therapies …

Ras conformational ensembles, allostery, and signaling

S Lu, H Jang, S Muratcioglu, A Gursoy, O Keskin… - Chemical …, 2016 - ACS Publications
Ras proteins are classical members of small GTPases that function as molecular switches by
alternating between inactive GDP-bound and active GTP-bound states. Ras activation is …

Excited-state observation of active K-Ras reveals differential structural dynamics of wild-type versus oncogenic G12D and G12C mutants

AL Hansen, X Xiang, C Yuan… - Nature Structural & …, 2023 - nature.com
Despite the prominent role of the K-Ras protein in many different types of human cancer,
major gaps in atomic-level information severely limit our understanding of its functions in …

Insights into protein–protein binding by binding free energy calculation and free energy decomposition for the Ras–Raf and Ras–RalGDS complexes

H Gohlke, C Kiel, DA Case - Journal of molecular biology, 2003 - Elsevier
Absolute binding free energy calculations and free energy decompositions are presented for
the protein–protein complexes H-Ras/C-Raf1 and H-Ras/RalGDS. Ras is a central switch in …

Converging free energy estimates: MM‐PB (GB) SA studies on the protein–protein complex Ras–Raf

H Gohlke, DA Case - Journal of computational chemistry, 2004 - Wiley Online Library
Estimating protein–protein interaction energies is a very challenging task for current
simulation protocols. Here, absolute binding free energies are reported for the complex H …

GTP-state-selective cyclic peptide ligands of K-Ras (G12D) block its interaction with Raf

Z Zhang, R Gao, Q Hu, H Peacock… - ACS central …, 2020 - ACS Publications
We report the identification of three cyclic peptide ligands of K-Ras (G12D) using an
integrated in vitro translation–mRNA display selection platform. These cyclic peptides show …

Increasing complexity of Ras signaling

SL Campbell, R Khosravi-Far, KL Rossman, GJ Clark… - Oncogene, 1998 - nature.com
The initial discovery that ras genes endowed retroviruses with potent carcinogenic
properties and the subsequent determination that mutated ras genes were present in a wide …

Small-molecule modulation of Ras signaling

J Spiegel, PM Cromm, G Zimmermann… - Nature chemical …, 2014 - nature.com
Despite intense efforts in pharmaceutical industry and academia, a therapeutic grip on
oncogenic Ras proteins has remained elusive. Mutated Ras is associated with∼ 20− 30% of …

Folding and binding cascades: dynamic landscapes and population shifts

S Kumar, B Ma, CJ Tsai, N Sinha, R Nussinov - Protein science, 2000 - cambridge.org
Whereas previously we have successfully utilized the folding funnels concept to rationalize
binding mechanisms (Ma B, Kumar S, Tsai CJ, Nussinov R, 1999, Protein Eng 12: 713–720) …

Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site

MT Mazhab-Jafari, CB Marshall… - Proceedings of the …, 2015 - National Acad Sciences
K-RAS4B (Kirsten rat sarcoma viral oncogene homolog 4B) is a prenylated, membrane-
associated GTPase protein that is a critical switch for the propagation of growth factor …