Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

R Amann, BM Fuchs - Nature Reviews Microbiology, 2008 - nature.com
The ribosomal-RNA (rRNA) approach to microbial evolution and ecology has become an
integral part of environmental microbiology. Based on the patchy conservation of rRNA …

Fluorescence in situ hybridization for the detection of prokaryotes

H Daims, K Stoecker, M Wagner - Molecular microbial ecology, 2004 - taylorfrancis.com
Determining the structure and dynamics of microbial communities is a core component of
microbial ecology. Traditionally, microbiologists used timeconsuming cultivation-based …

Bacterial chemolithoautotrophy via manganese oxidation

H Yu, JR Leadbetter - Nature, 2020 - nature.com
Manganese is one of the most abundant elements on Earth. The oxidation of manganese
has long been theorized—yet has not been demonstrated,–—to fuel the growth of …

Diverse uncultivated ultra-small bacterial cells in groundwater

B Luef, KR Frischkorn, KC Wrighton… - Nature …, 2015 - nature.com
Bacteria from phyla lacking cultivated representatives are widespread in natural systems
and some have very small genomes. Here we test the hypothesis that these cells are small …

[图书][B] Modern soil microbiology

JD Van Elsas, JT Trevors, JK Jansson, P Nannipieri - 2006 - taylorfrancis.com
In the ten years since the publication of Modern Soil Microbiology, the study of soil
microbiology has significantly changed, both in the understanding of the diversity and …

Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants

S Lücker, J Schwarz, C Gruber-Dorninger… - The ISME …, 2015 - academic.oup.com
Numerous past studies have shown members of the genus Nitrospira to be the predominant
nitrite-oxidizing bacteria (NOB) in nitrifying wastewater treatment plants (WWTPs). Only …

Functionally relevant diversity of closely related Nitrospira in activated sludge

C Gruber-Dorninger, M Pester, K Kitzinger… - The ISME …, 2015 - academic.oup.com
Nitrospira are chemolithoautotrophic nitrite-oxidizing bacteria that catalyze the second step
of nitrification in most oxic habitats and are important for excess nitrogen removal from …

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

C Schwab, D Berry, I Rauch, I Rennisch… - The ISME …, 2014 - academic.oup.com
Although alterations in gut microbiota composition during acute colitis have been repeatedly
observed, associated functional changes and the recovery from dysbiosis received little …

Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants

Y Kong, JL Nielsen, PH Nielsen - Applied and environmental …, 2005 - Am Soc Microbiol
Microautoradiography combined with fluorescence in situ hybridization (MAR-FISH) was
used to screen for potential polyphosphate-accumulating organisms (PAO) in a full-scale …

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

K Kubo, KG Lloyd, JF Biddle, R Amann… - The ISME …, 2012 - academic.oup.com
Members of the highly diverse Miscellaneous Crenarchaeotal Group (MCG) are globally
distributed in various marine and continental habitats. In this study, we applied a polyphasic …