[HTML][HTML] Splicing mutations in human genetic disorders: examples, detection, and confirmation

A Anna, G Monika - Journal of applied genetics, 2018 - Springer
Precise pre-mRNA splicing, essential for appropriate protein translation, depends on the
presence of consensus “cis” sequences that define exon-intron boundaries and regulatory …

Pick one, but be quick: 5′ splice sites and the problems of too many choices

X Roca, AR Krainer, IC Eperon - Genes & development, 2013 - genesdev.cshlp.org
Splice site selection is fundamental to pre-mRNA splicing and the expansion of genomic
coding potential. 5′ Splice sites (5′ ss) are the critical elements at the 5′ end of introns …

Guidelines for splicing analysis in molecular diagnosis derived from a set of 327 combined in silico/in vitro studies on BRCA1 and BRCA2 variants

C Houdayer, V Caux‐Moncoutier, S Krieger… - Human …, 2012 - Wiley Online Library
Assessing the impact of variants of unknown significance (VUS) on splicing is a key issue in
molecular diagnosis. This impact can be predicted by in silico tools, but proper evaluation …

Benchmarking deep learning splice prediction tools using functional splice assays

TV Riepe, M Khan, S Roosing, FPM Cremers… - Human …, 2021 - Wiley Online Library
Hereditary disorders are frequently caused by genetic variants that affect pre‐messenger
RNA splicing. Though genetic variants in the canonical splice motifs are almost always …

Antisense-mediated exon skipping: a versatile tool with therapeutic and research applications

A Aartsma-Rus, GJB Van Ommen - Rna, 2007 - rnajournal.cshlp.org
Antisense-mediated modulation of splicing is one of the few fields where antisense
oligonucleotides (AONs) have been able to live up to their expectations. In this approach …

NF1 Molecular Characterization and Neurofibromatosis Type I Genotype–Phenotype Correlation: The French Experience

A Sabbagh, E Pasmant, A Imbard, A Luscan… - Human …, 2013 - Wiley Online Library
ABSTRACT Neurofibromatosis type 1 (NF 1) affects about one in 3,500 people in all ethnic
groups. Most NF 1 patients have private loss‐of‐function mutations scattered along the NF 1 …

SPiP: Splicing Prediction Pipeline, a machine learning tool for massive detection of exonic and intronic variant effects on mRNA splicing

R Leman, B Parfait, D Vidaud, E Girodon… - Human …, 2022 - Wiley Online Library
Modeling splicing is essential for tackling the challenge of variant interpretation as each
nucleotide variation can be pathogenic by affecting pre‐mRNA splicing via …

Novel diagnostic tool for prediction of variant spliceogenicity derived from a set of 395 combined in silico/in vitro studies: an international collaborative effort

R Leman, P Gaildrat, G Le Gac, C Ka… - Nucleic acids …, 2018 - academic.oup.com
Variant interpretation is the key issue in molecular diagnosis. Spliceogenic variants
exemplify this issue as each nucleotide variant can be deleterious via disruption or creation …

[HTML][HTML] A highly sensitive genetic protocol to detect NF1 mutations

MC Valero, Y Martín, E Hernández-Imaz… - The Journal of Molecular …, 2011 - Elsevier
Neurofibromatosis type 1 (NF1) is a hereditary disorder caused by mutations in the NF1
gene. Detecting mutation in NF1 is hindered by the gene's large size, the lack of mutation …

How does the Schwann cell lineage form tumors in NF1?

SL Carroll, N Ratner - Glia, 2008 - Wiley Online Library
Neurofibromas are benign tumors of peripheral nerve that occur sporadically or in patients
with the autosomal dominant tumor predisposition syndrome neurofibromatosis type 1 …