RNA sequencing: the teenage years
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …
transcriptome-wide analysis of differential gene expression and differential splicing of …
Single-cell RNA-seq technologies and related computational data analysis
G Chen, B Ning, T Shi - Frontiers in genetics, 2019 - frontiersin.org
Single-cell RNA sequencing (scRNA-seq) technologies allow the dissection of gene
expression at single-cell resolution, which greatly revolutionizes transcriptomic studies. A …
expression at single-cell resolution, which greatly revolutionizes transcriptomic studies. A …
Dynamic genome evolution in a model fern
The large size and complexity of most fern genomes have hampered efforts to elucidate
fundamental aspects of fern biology and land plant evolution through genome-enabled …
fundamental aspects of fern biology and land plant evolution through genome-enabled …
Patient-derived organoids model treatment response of metastatic gastrointestinal cancers
G Vlachogiannis, S Hedayat, A Vatsiou, Y Jamin… - Science, 2018 - science.org
Patient-derived organoids (PDOs) have recently emerged as robust preclinical models;
however, their potential to predict clinical outcomes in patients has remained unclear. We …
however, their potential to predict clinical outcomes in patients has remained unclear. We …
High-fiber diet mitigates maternal obesity-induced cognitive and social dysfunction in the offspring via gut-brain axis
X Liu, X Li, B Xia, X Jin, Q Zou, Z Zeng, W Zhao, S Yan… - Cell metabolism, 2021 - cell.com
Maternal obesity has been reported to be related to neurodevelopmental disorders in the
offspring. However, the underlying mechanisms and effective interventions remain unclear …
offspring. However, the underlying mechanisms and effective interventions remain unclear …
Systematic comparison and assessment of RNA-seq procedures for gene expression quantitative analysis
LA Corchete, EA Rojas, D Alonso-López… - Scientific reports, 2020 - nature.com
RNA-seq is currently considered the most powerful, robust and adaptable technique for
measuring gene expression and transcription activation at genome-wide level. As the …
measuring gene expression and transcription activation at genome-wide level. As the …
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
High-throughput sequencing of mRNA (RNA-seq) has become the standard method for
measuring and comparing the levels of gene expression in a wide variety of species and …
measuring and comparing the levels of gene expression in a wide variety of species and …
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
INTRODUCTION The ruminants are one of the most successful mammalian lineages,
exhibiting extensive morphological and ecological diversity and containing several key …
exhibiting extensive morphological and ecological diversity and containing several key …
GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet
Genetic and environmental factors collectively determine plant growth and yield. In the past
20 years, genome-wide association studies (GWAS) have been conducted on crops to …
20 years, genome-wide association studies (GWAS) have been conducted on crops to …
variancePartition: interpreting drivers of variation in complex gene expression studies
GE Hoffman, EE Schadt - BMC bioinformatics, 2016 - Springer
Background As large-scale studies of gene expression with multiple sources of biological
and technical variation become widely adopted, characterizing these drivers of variation …
and technical variation become widely adopted, characterizing these drivers of variation …