MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
Mitochondrial genome (mitogenome) plays important roles in evolutionary and ecological
studies. It becomes routine to utilize multiple genes on mitogenome or the entire …
studies. It becomes routine to utilize multiple genes on mitogenome or the entire …
Relation between mitochondrial DNA hyperdiversity, mutation rate and mitochondrial genome evolution in Melarhaphe neritoides (Gastropoda: Littorinidae) and other …
S Fourdrilis, AM de Frias Martins, T Backeljau - Scientific reports, 2018 - nature.com
Mitochondrial DNA hyperdiversity is primarily caused by high mutation rates (µ) and has
potential implications for mitogenome architecture and evolution. In the hyperdiverse mtDNA …
potential implications for mitogenome architecture and evolution. In the hyperdiverse mtDNA …
CONSULT: accurate contamination removal using locality-sensitive hashing
A fundamental question appears in many bioinformatics applications: Does a sequencing
read belong to a large dataset of genomes from some broad taxonomic group, even when …
read belong to a large dataset of genomes from some broad taxonomic group, even when …
Addressing the complex phylogenetic relationship of the Gempylidae fishes using mitogenome data
S Mthethwa, AE Bester‐van der Merwe… - Ecology and …, 2023 - Wiley Online Library
The Gempylidae (snake mackerels) family, belonging to the order Perciformes, consists of
about 24 species described in 16 genera primarily distributed in tropical, subtropical, and …
about 24 species described in 16 genera primarily distributed in tropical, subtropical, and …
Complete mitochondrial genomes from transcriptomes: assessing pros and cons of data mining for assembling new mitogenomes
Thousands of eukaryotes transcriptomes have been generated, mainly to investigate
nuclear genes expression, and the amount of available data is constantly increasing. A …
nuclear genes expression, and the amount of available data is constantly increasing. A …
Integration of mitogenomic and morphological data disentangles the systematics of Pollenia and establishes a revised phylogenetic hypothesis for the Polleniidae
NP Johnston, M Piwczyński, P Trzeciak… - Systematic …, 2023 - Wiley Online Library
Abstract The Polleniidae (Diptera) are a family of flies best known for species of the genus
Pollenia, which overwinter inside human dwellings. Previously divided across the …
Pollenia, which overwinter inside human dwellings. Previously divided across the …
Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
A Tempestini, G Massamba-N'Siala, F Vermandele… - BMC genomics, 2020 - Springer
Background Annelids are one the most speciose and ecologically diverse groups of
metazoans. Although a significant effort has been recently invested in sequencing genomes …
metazoans. Although a significant effort has been recently invested in sequencing genomes …
Two reads to rule them all: Nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome …
HM Gan, SM Linton, CM Austin - Marine genomics, 2019 - Elsevier
Despite recent advances in sequencing technology, a complete mitogenome assembly is
still unavailable for the gecarcinid land crabs that include the iconic Christmas Island red …
still unavailable for the gecarcinid land crabs that include the iconic Christmas Island red …
Mitogenome-wise codon usage pattern from comparative analysis of the first mitogenome of Blepharipa sp. (Muga uzifly) with other Oestroid flies
Abstract Uziflies (Family: Tachinidae) are dipteran endoparasites of sericigenous insects
which cause major economic loss in the silk industry globally. Here, we are presenting the …
which cause major economic loss in the silk industry globally. Here, we are presenting the …
First mitochondrial genomes of five hoverfly species of the genus Eristalinus (Diptera: Syrphidae)
The hoverfly genus Eristalinus (Diptera, Syrphidae) contains many widespread pollinators.
The majority of the species of Eristalinus occur in the Afrotropics and their molecular …
The majority of the species of Eristalinus occur in the Afrotropics and their molecular …