Isoform-resolved transcriptome of the human preimplantation embryo

D Torre, NJ Francoeur, Y Kalma, I Gross Carmel… - Nature …, 2023 - nature.com
Human preimplantation development involves extensive remodeling of RNA expression and
splicing. However, its transcriptome has been compiled using short-read sequencing data …

TENT5 cytoplasmic noncanonical poly (A) polymerases regulate the innate immune response in animals

V Liudkovska, PS Krawczyk, A Brouze, N Gumińska… - Science …, 2022 - science.org
Innate immunity is the first line of host defense against pathogens. Here, through global
transcriptome and proteome analyses, we uncover that newly described cytoplasmic poly …

Germline immortality relies on TRIM32-mediated turnover of a maternal mRNA activator in C. elegans

TD Oyewale, CR Eckmann - Science Advances, 2022 - science.org
How the germ line achieves a clean transition from maternal to zygotic gene expression
control is a fundamental problem in sexually reproducing organisms. Whereas several …

Macrophage inflammation resolution requires CPEB4-directed offsetting of mRNA degradation

C Suñer, A Sibilio, J Martín, CL Castellazzi, O Reina… - Elife, 2022 - elifesciences.org
Chronic inflammation is a major cause of disease. Inflammation resolution is in part directed
by the differential stability of mRNAs encoding pro-inflammatory and anti-inflammatory …

Antagonistic control of Caenorhabditis elegans germline stem cell proliferation and differentiation by PUF proteins FBF-1 and FBF-2

X Wang, M Ellenbecker, B Hickey, NJ Day, E Osterli… - Elife, 2020 - elifesciences.org
Stem cells support tissue maintenance, but the mechanisms that coordinate the rate of stem
cell self-renewal with differentiation at a population level remain uncharacterized. We find …

Post-transcriptional repression of CFP-1 expands the regulatory repertoire of LIN-41/TRIM71

P Kumari, LH Thuestad, R Ciosk - Nucleic Acids Research, 2023 - academic.oup.com
Abstract The Caenorhabditis elegans LIN-41/TRIM71 is a well-studied example of a
versatile regulator of mRNA fate, which plays different biological functions involving distinct …

Diverse functions of deadenylases in DNA damage response and genomic integrity

YB Yan - Wiley Interdisciplinary Reviews: RNA, 2021 - Wiley Online Library
DNA damage response (DDR) is a coordinated network of diverse cellular processes
including the detection, signaling, and repair of DNA lesions, the adjustment of metabolic …

Regulation of Oocyte mRNA Metabolism: A Key Determinant of Oocyte Developmental Competence

AF Ermisch, JR Wood - Molecular Mechanisms Determining Mammalian …, 2024 - Springer
The regulation of mRNA transcription and translation is uncoupled during oogenesis. The
reason for this uncoupling is two-fold. Chromatin is only accessible to the transcriptional …

Structures of mammalian GLD-2 proteins reveal molecular basis of their functional diversity in mRNA and microRNA processing

XY Ma, H Zhang, JX Feng, JL Hu, B Yu… - Nucleic Acids …, 2020 - academic.oup.com
The stability and processing of cellular RNA transcripts are efficiently controlled via non-
templated addition of single or multiple nucleotides, which is catalyzed by various …

RPL-4 and RPL-9 ̶Mediated Ribosome Purifications Facilitate the Efficient Analysis of Gene Expression in Caenorhabditis elegans Germ Cells

M Nousch - G3: Genes, Genomes, Genetics, 2020 - academic.oup.com
In many organisms, tissue complexity and cellular diversity create a barrier that can hinder
our understanding of gene expression programs. To address this problem, methods have …