The microbial ecology of estuarine ecosystems

BC Crump, JL Bowen - Annual Review of Marine Science, 2024 - annualreviews.org
Human civilization relies on estuaries, and many estuarine ecosystem services are provided
by microbial communities. These services include high rates of primary production that …

A meta-analysis approach to defining the culturable core of plant endophytic bacterial communities

V Riva, F Mapelli, A Bagnasco… - Applied and …, 2022 - Am Soc Microbiol
Endophytic bacteria are key members of the plant microbiome, which phylogenetic diversity
has been widely described through next-generation sequencing technologies in the last …

Differential microbial assembly processes and co‐occurrence networks in the soil‐root continuum along an environmental gradient

Y Zhong, PO Sorensen, G Zhu, X Jia, J Liu… - imeta, 2022 - Wiley Online Library
Microorganisms of the soil‐root continuum play key roles in ecosystem function. The Loess
Plateau is well known for its severe soil erosion and thick loess worldwide, where mean …

Evidence for assimilatory nitrate reduction as a previously overlooked pathway of reactive nitrogen transformation in estuarine suspended particulate matter

R Hu, S Liu, W Huang, Q Nan, PJ Strong… - Environmental …, 2022 - ACS Publications
Suspended particulate matter (SPM) contributes to the loss of reactive nitrogen (Nr) in
estuarine ecosystems. Although denitrification and anaerobic ammonium oxidation in SPM …

Maize root-associated niches determine the response variation in bacterial community assembly and function to phthalate pollution

YH Huang, Y Liu, J Geng, H Lü, HM Zhao… - Journal of Hazardous …, 2022 - Elsevier
Plant root-associated microbiome can be influenced by environmental stress like pollution.
However, how organic pollution influences microbial communities in different root …

Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes

L Qian, X Yu, H Gu, F Liu, Y Fan, C Wang, Q He, Y Tian… - Microbiome, 2023 - Springer
Background Mangrove ecosystems are considered as hot spots of biogeochemical cycling,
yet the diversity, function and coupling mechanism of microbially driven biogeochemical …

Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

ZF Zhang, LR Liu, YP Pan, J Pan, M Li - Microbiome, 2023 - Springer
Background Mangrove wetlands are coastal ecosystems with important ecological features
and provide habitats for diverse microorganisms with key roles in nutrient and …

Effect of rice (Oryza sativa L.) genotype on yield: Evidence from recruiting spatially consistent rhizosphere microbiome

J Xiong, J Lu, X Li, Q Qiu, J Chen, C Yan - Soil Biology and Biochemistry, 2021 - Elsevier
The rhizosphere microbiome facilitates a range of beneficial functions for its host plant. Thus,
exploring the functionality of the rhizosphere microbiome and its underlying driving factors …

MCycDB: a curated database for comprehensively profiling methane cycling processes of environmental microbiomes

L Qian, X Yu, J Zhou, H Gu, J Ding… - Molecular Ecology …, 2022 - Wiley Online Library
Methane is a critical greenhouse gas with significant impacts on environmental and global
change. However, CH4 cycling processes and coupling mechanisms with the …

Chemoautotrophic sulphur oxidizers dominate microbial necromass carbon formation in coastal blue carbon ecosystems

X Yu, L Qian, Q Tu, Y Peng, C Wang, D Wu… - Functional …, 2023 - Wiley Online Library
Coastal blue carbon (C) ecosystems are recognized as efficient natural C sinks and play key
roles in mitigating global climate change. Microbially driven C, nitrogen (N) and sulphur (S) …