Epigenome plasticity in plants

JPB Lloyd, R Lister - Nature Reviews Genetics, 2022 - nature.com
Plant intra-individual and inter-individual variation can be determined by the epigenome, a
set of covalent modifications of DNA and chromatin that can alter genome structure and …

Epigenetics for crop improvement in times of global change

I Kakoulidou, EV Avramidou, M Baránek… - Biology, 2021 - mdpi.com
Simple Summary Research on plant epigenetics aims to understand how endogenous,
biotic, and abiotic factors regulate plant development and growth independent of changes in …

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

JT Lovell, AH MacQueen, S Mamidi, J Bonnette… - Nature, 2021 - nature.com
Long-term climate change and periodic environmental extremes threaten food and fuel
security and global crop productivity,–. Although molecular and adaptive breeding strategies …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
Allotetraploid cotton (Gossypium) species represents a model system for the study of plant
polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome …

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

VL Sork, SJ Cokus, ST Fitz-Gibbon, AV Zimin… - Nature …, 2022 - nature.com
The genus Quercus, which emerged∼ 55 million years ago during globally warm
temperatures, diversified into∼ 450 extant species. We present a high-quality de novo …

The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine

J Li, F Han, T Yuan, W Li, Y Li, HX Wu, H Wei… - Nature …, 2023 - nature.com
Epigenetics has been revealed to play a crucial role in the long-term memory in plants.
However, little is known about whether the epigenetic modifications occur with age …

Molecular properties of epimutation hotspots

RR Hazarika, M Serra, Z Zhang, Y Zhang, RJ Schmitz… - Nature plants, 2022 - nature.com
Mistakes in the maintenance of CG methylation are a source of heritable epimutations in
plants. Multigenerational surveys indicate that the rate of these stochastic events varies …

Causes of mutation rate variability in plant genomes

D Quiroz, M Lensink, DJ Kliebenstein… - Annual Review of …, 2023 - annualreviews.org
Mutation is the source of all heritable diversity, the essential material of evolution and
breeding. While mutation rates are often regarded as constant, variability in mutation rates …

Haplotype‐resolved genome assembly of Populus tremula × P. alba reveals aspen‐specific megabase satellite DNA

R Zhou, JW Jenkins, Y Zeng, S Shu, H Jang… - The Plant …, 2023 - Wiley Online Library
Populus species play a foundational role in diverse ecosystems and are important
renewable feedstocks for bioenergy and bioproducts. Hybrid aspen Populus tremula× P …

Genome-wide DNA mutations in Arabidopsis plants after multigenerational exposure to high temperatures

Z Lu, J Cui, L Wang, N Teng, S Zhang, HM Lam, Y Zhu… - Genome Biology, 2021 - Springer
Background Elevated temperatures can cause physiological, biochemical, and molecular
responses in plants that can greatly affect their growth and development. Mutations are the …